Entry information : CroPrx53 (cra_locus_110168_iso_1_len_303_ver_3)
Entry ID 11318
Creation 2012-09-17 (Christophe Dunand)
Last sequence changes 2012-09-17 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2012-09-17 (Christophe Dunand)
Peroxidase information: CroPrx53 (cra_locus_110168_iso_1_len_303_ver_3)
Name (synonym) CroPrx53 (cra_locus_110168_iso_1_len_303_ver_3)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroPrx53
start..stop
S start..stop
CroPrx44 169 5e-54 1..80 1..80
TaPrx78 88 4e-24 1..80 1..79
AcPrx11 89 6e-24 1..80 1..80
ZmPrx39 90 1e-23 12..80 9..76
Literature and cross-references CroPrx53 (cra_locus_110168_iso_1_len_303_ver_3)
Protein sequence: CroPrx53 (cra_locus_110168_iso_1_len_303_ver_3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   80 (58)
PWM (Da):   %s   8636.48 (6339.2)  
PI (pH):   %s   7.85 (7.34) Peptide Signal:   %s   cut: 23 range:23-80
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MGSLLINIVI GIVLLLVRCC SSSNELKIGY YEKTCPSAEA IVKNTVRKAY ENNDTGIAPA LIRLHFHDCF VRGCDASVLL 

Retrieve as FASTA  
Remarks Partial sequence from ESt. Short 5'end . Contains probably a C-tem extension based on orthologs.
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGCAGTT TATTGATTAA TATTGTAATT GGCATAGTTT TATTATTGGT AAGATGTTGT TCATCAAGTA ATGAGTTGAA AATTGGGTAT TATGAGAAAA CATGTCCATC AGCAGAAGCT  ATAGTGAAAA ATACAGTGAG AAAAGCTTAC GAAAATAATG ATACAGGGAT TGCTCCTGCC CTCATTCGAC TCCACTTCCA CGACTGTTTT GTTAGGGGTT GTGATGCATC CGTCCTCCTT 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CTGAAATTGC ATTAAAAAGT TTAGTATATA GAGATTTTAG CTTGCTTCTT TTATAGAAGA AAATGGGCAG TTTATTGATT AATATTGTAA TTGGCATAGT TTTATTATTG GTAAGATGTT  GTTCATCAAG TAATGAGTTG AAAATTGGGT ATTATGAGAA AACATGTCCA TCAGCAGAAG CTATAGTGAA AAATACAGTG AGAAAAGCTT ACGAAAATAA TGATACAGGG ATTGCTCCTG 
CCCTCATTCG ACTCCACTTC CACGACTGTT TTGTTAGGGG TTGTGATGCA TCCGTCCTCC TT 

Retrieve as FASTA