Entry information : CroPrx62 (cra_locus_66235_iso_1_len_338_ver_3)
Entry ID 11328
Creation 2012-09-18 (Christophe Dunand)
Last sequence changes 2012-09-18 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2012-09-18 (Christophe Dunand)
Peroxidase information: CroPrx62 (cra_locus_66235_iso_1_len_338_ver_3)
Name (synonym) CroPrx62 (cra_locus_66235_iso_1_len_338_ver_3)
Class Class III peroxidase     [Orthogroup: Prx030]*
Taxonomy Eukaryota Viridiplantae Streptophyta Apocynaceae Catharanthus
Organism Catharanthus roseus    [TaxId: 4058 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CroPrx62
start..stop
S start..stop
StPrx04 377 4e-134 1..203 112..315
LePrx30 371 2e-131 1..203 112..315
MePrx06 358 2e-126 1..203 119..321
PtPrx08 357 6e-126 1..203 120..322
Literature and cross-references CroPrx62 (cra_locus_66235_iso_1_len_338_ver_3)
Protein sequence: CroPrx62 (cra_locus_66235_iso_1_len_338_ver_3)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   203
PWM (Da):   %s   22487.11  
PI (pH):   %s   4.6
Sequence
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Send to Peroxiscan
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ECPKTVSCAD IVALSARDGL LWLGGPRVEM RTGRKDSKES YLAEVENYLP NHNDSMSSVL SRFQSIGVDT EGTVALLGAH SVGRVHCVNL VHRLYPTVDP TIDPDYAEYL KGRCPSPDPS 
PEEVLYSRND RETPMILDNM YYKNILSNKG LLIVDQELVT DPNTSPFVEK MAVDNGYFHD QFARALRILS ENNPLTGDQG EIR 

Retrieve as FASTA  
Remarks Partial sequence from two contig (cra_locus_66236_iso_1_len_299_ver_3). Short overlap between the two contigs. 5' and short 3' are mising
CDS
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GAATGTCCAA AAACTGTCTC TTGTGCTGAT ATCGTTGCTC TTTCTGCTAG GGATGGTCTT CTCTGGTTGG GAGGACCGCG CGTTGAAATG AGAACAGGGA GGAAGGACAG CAAAGAGAGT  TACTTGGCAG AAGTTGAGAA TTACCTTCCT AACCACAATG ACTCCATGTC ATCTGTGCTT TCTCGATTCC AATCCATTGG TGTTGATACT GAAGGAACTG TGGCACTTCT AGGGGCTCAC  TCTGTAGGAC GAGTTCATTG TGTAAACTTA GTCCACAGAC TTTACCCAAC AGTTGATCCA ACCATCGACC CGGACTACGC AGAGTACCTT AAAGGCCGAT GCCCCTCACC AGATCCTAGC  CCTGAGGAAG TTTTATACTC GAGAAATGAT CGTGAAACTC CCATGATTTT AGACAATATG TACTACAAGA ACATCTTGAG CAACAAAGGG CTATTAATTG TGGATCAAGA ATTGGTTACT  GATCCAAATA CTTCTCCTTT TGTGGAGAAA ATGGCAGTTG ATAATGGTTA TTTTCATGAT CAATTTGCGC GGGCACTGCG CATTTTGTCT GAAAATAATC CGCTTACTGG AGATCAAGGC 
GAAATTAGA 

Retrieve as FASTA  
cDNA
Send to BLAST
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GAATGTCCAA AAACTGTCTC TTGTGCTGAT ATCGTTGCTC TTTCTGCTAG GGATGGTCTT CTCTGGTTGG GAGGACCGCG CGTTGAAATG AGAACAGGGA GGAAGGACAG CAAAGAGAGT  TACTTGGCAG AAGTTGAGAA TTACCTTCCT AACCACAATG ACTCCATGTC ATCTGTGCTT TCTCGATTCC AATCCATTGG TGTTGATACT GAAGGAACTG TGGCACTTCT AGGGGCTCAC  TCTGTAGGAC GAGTTCATTG TGTAAACTTA GTCCACAGAC TTTACCCAAC AGTTGATCCA ACCATCGACC CGGACTACGC AGAGTACCTT AAAGGCCGAT GCCCCTCACC AGATCCTAGC  CCTGAGGAAG TTTTATACTC GAGAAATGAT CGTGAAACTC CCATGATTTT AGACAATATG TACTACAAGA ACATCTTGAG CAACAAAGGG CTATTAATTG TGGATCAAGA ATTGGTTACT  GATCCAAATA CTTCTCCTTT TGTGGAGAAA ATGGCAGTTG ATAATGGTTA TTTTCATGAT CAATTTGCGC GGGCACTGCG CATTTTGTCT GAAAATAATC CGCTTACTGG AGATCAAGGC 
GAAATTAGAA A 

Retrieve as FASTA