Sequence Properties
first value : protein second value (mature protein)
|
Length (aa): |
292 (275) |
PWM (Da): |
30817.71 (29145.8) |
|
PI (pH):
| 8.8 (8.80) |
Peptide Signal:
| cut: 18 range:18-292 |
|
Sequence 0
Send to BLAST
Send to Peroxiscan
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MGIVLGFLGN IAVSTQAQLE MGYYSKSCPE AEKIVRxVVE DHIRNAHSLA AALLRMHFHD LLRRQGCxAS VLLNSS*SNP AERDSPxNFT VRGxDFIDRx KSLVEAEYAR IVSCADIIAL
xARDAIVATG GPFWRVPxVR RxGVISRASE ALSNIPSPSS KLNAPQIFFA NKGLDLKDLV LSSGAHMIGA SHCSSFRNHL YNFTGGEDQD PSLESGYAAN LKAKNCRSLS NDTIFRSDSA
ITTSPATKLF ITQVLQGSLD NFYAQFVMAM EKMGRIDVKT RLAGEIRKHC AGE
|
Retrieve as FASTA
|
|
Remarks |
Pseudogene from genomic (stop codon in frame and missing fragment in exon 4). Scaffold_11_36240 (9818..11197) |
DNA ►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT ATTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGTGAGAGA nGTTGTCGAA
GATCACATCC GTAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCA CTTTCATGAT TTGCTTCGTC GGGGTTTTTA CTTTCTCTCC CATGTAGCTT GCATCAGTGC ACGTTAATAT
CTTACAGCAA ACTTGAGAAA TTTGGAGAAT CATTACTGCA TATCTACATT TCAAGAGTAC TAGTATTTTC TTAATCTCAT GCTAGCTTTG AGAAATTTGA GCTCGTCGTT TGTTGATCAC
CGTCAGGGTT GTGAnGCTTC TGTGCTCTTG AACTCTAGTT GAAGCAACCC AGCAGAGAGA GATTCTCCTC nAAACTTCAC TGTGAGAGGC nTnGACTTCA TCGATCGAGn GAAGAGCCTT
GTCGAAGCTG AATATGCCAG GATTGTCTCT TGCGCAGACA TCATAGCTTT GnCCGCAAGA GATGCAATAG TGGCCACTAT AAGGACAACA GCACAAAGAT TATTTCCACG AAAGCAGATA
TCCATTGTTC AAGTGCGTCT AGATCTTAAC ACTATGTGAA AACTGTTTTC TCCACTGATG ATGGAATGAG TATAGATTTG CCAGCGAAAC ATTGAGATTG AGTGGGGAAT TAAAACTGTA
TCTGATGTGC ATGAAACTAT AGGGAGGTCC ATTTTGGAGA GTTCCTnCnG TAAGAAGAnA nGGAGTnATT TCAAGGGCAT CGGAAGCATT GAGCAACATC CCTTCTCCAT CCAGCAAACT
CAACGCTCCC CAAATATTTT TCGCCAATAA AGGACTCGAT CTTAAAGACT TAGTTTTATC GTCCGGTGAG GCCATATGTC ACCCACCTAT AAAAATGAGA GGATATCAGT TGATGAGTTA
AACCATTAGT ATCGAGAGAT ATCGAAATGT ATATTCAGTA CGTTAGTCAT GTGCTAAATT AGTAGTGGCT GATGTGACTT GTTCTGACAT TGGAGCTCAC ATGATTGGTG CATCTCACTG
CTCGTCTTTC CGGAACCACC TATACAACTT CACTGGCGGT GAGGATCAAG ATCCCTCCTT GGAAAGCGGG TACGCGGCGA ATCTCAAGGC CAAGAATTGT AGGAGCCTGA GTAATGATAC
CATCTTTCGA TCGGATTCTG CTATCACTAC CAGTCCTGCT ACCAAGCTCT TCATCACACA AGTCCTTCAA GGGTCACTTG ACAACTTCTA CGCTCAATTT GTTATGGCAA TGGAGAAGAT
GGGCCGGATC GACGTGAAGA CTAGGCTGGC GGGCGAGATA AGGAAGCATT GTGCTGGTGA A
|
Retrieve as FASTA
|
|
CDS►
Send to BLAST
|
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGGCATTG TTTTGGGTTT TCTAGGGAAT ATTGCTGTCT CAACTCAAGC TCAACTTGAG ATGGGTTATT ATTCTAAGAG CTGCCCAGAA GCTGAAAAAA TTGTGAGAGA nGTTGTCGAA
GATCACATCC GTAATGCTCA TTCTTTAGCA GCCGCTCTGC TGAGGATGCA CTTTCATGAT TTGCTTCGTC GGCAGGGTTG TGAnGCTTCT GTGCTCTTGA ACTCTAGTTG AAGCAACCCA
GCAGAGAGAG ATTCTCCTCn AAACTTCACT GTGAGAGGCn TnGACTTCAT CGATCGAGnG AAGAGCCTTG TCGAAGCTGA ATATGCCAGG ATTGTCTCTT GCGCAGACAT CATAGCTTTG
nCCGCAAGAG ATGCAATAGT GGCCACTGGA GGTCCATTTT GGAGAGTTCC TnCnGTAAGA AGAnAnGGAG TnATTTCAAG GGCATCGGAA GCATTGAGCA ACATCCCTTC TCCATCCAGC
AAACTCAACG CTCCCCAAAT ATTTTTCGCC AATAAAGGAC TCGATCTTAA AGACTTAGTT TTATCGTCCG GTGCTCACAT GATTGGTGCA TCTCACTGCT CGTCTTTCCG GAACCACCTA
TACAACTTCA CTGGCGGTGA GGATCAAGAT CCCTCCTTGG AAAGCGGGTA CGCGGCGAAT CTCAAGGCCA AGAATTGTAG GAGCCTGAGT AATGATACCA TCTTTCGATC GGATTCTGCT
ATCACTACCA GTCCTGCTAC CAAGCTCTTC ATCACACAAG TCCTTCAAGG GTCACTTGAC AACTTCTACG CTCAATTTGT TATGGCAATG GAGAAGATGG GCCGGATCGA CGTGAAGACT
AGGCTGGCGG GCGAGATAAG GAAGCATTGT GCTGGTGAA
|
Retrieve as FASTA
|
|