View Redoxidase 11660

Entry information : CqueGPx01

Entry ID	11660
Creation	2013-02-28 (Christophe Dunand)
Last sequence changes	2013-02-28 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2013-08-20 (Catherine Mathe (Scipio))

Peroxidase information: CqueGPx01

Name

CqueGPx01

Class

Fungi-Bacteria glutathione peroxidase [Orthogroup: Gpx3001]

Taxonomy

Eukaryota Fungi Basidiomycota Cronartiaceae Cronartium

Organism

Cronartium quercuum [TaxId: 60197 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CqueGPx01 start..stop	S start..stop
MlpGPx01	301	9.47e-107	1..168	1..168
PgrGPx01	261	1.52e-90	2..163	49..210
PUtriGPx01	249	3.95e-86	4..165	22..183
PbreGPx01	235	6.21e-80	1..161	65..225

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	87024..87169	144	N° 2	86844..86957	112	N° 3	86665..86761	95	N° 4	86537..86569	31
N° 5	86415..86461	45	N° 6	86283..86349	65
complement(join(86283..86349,86415..86461,86537..86569,86665..86761,86844..86957 ,87024..87169))

Literature and cross-references CqueGPx01

DNA ref.	JGI genome: scaffold_164 (87169..86283)
Cluster/Prediction ref.	JGI gene: 51194

Protein sequence: CqueGPx01

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	167
PWM (Da):	18714.55	Transmb domain:	i7-24o
PI (pH):	7.92

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSSSPFYNLAVPMPNGSEYKLVDTKGKVVLIVNVASKCGFTPQYEGLEKLWQKYKDKDFIIIGFPCNQFGGQEPGTDEVVASFCKLNYGVSFPITKKCEVNGDSASEVYKFLKDEKPGLL
GLTRIKWNFEKFLVDRSGHVRYRHASTTKPEALEKEIEELLGESAKA*

Retrieve as FASTA

Remarks

Complete sequence from genomic (5 introns).

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCCTCCTCGCCGTTTTACAATCTCGCAGTCCCGATGCCGAATGGTTCTGAATATAAACTTGTGGATACGAAGGGCAAGGTAGTCTTAATCGTCAACGTCGCTTCTAAGTGCGGATTC
ACACCCCAATACGAAGGATTAGAGAAGTACGCTAAACTTTACCCGATCTGGTTTTGAATCTCCCCACTGACGCTAAGTTTTTGATCGCACAGGCGCTTTGGCAGAAATACAAAGACAAAG
ACTTCATCATCATTGGGTTCCCATGCAATCAGTTTGGAGGGCAAGAGCCTGGGACGGACGAGGTAGTGGCTAGCTTCTGTAAATTGAAGTACGTATTTATATGGCCTCATTTTGTTTCTT
TCTGCCTTGAAGTGCTCTCGATTGAAATCGGGTTCGGTCTGTCTATGTAGTTTTACGGGGTGAGCTTTCCGATCACGAAGAAGTGTGAGGTGAATGGAGACTCGGCGAGCGAAGTTTACA
AATTTTTGAAGGACGAGAAACCTGGCTTGGTCAGAACTGTCCCTTAGCAATAAAGATCCTCCAACATTGCGTTTTATGAGAGCTGAACTGTCGACCTCTGTTTGGATCTATGTTTATGAT
TCAGTTTTGGGCCTCACTCGAATCAAATGGAACTTTGAGGTAGGCTCGCCTACGCAATCCTGCTTTGAATCTTTTACTTGTTCTTCTTTCTGACCAGCCGGCTTGGATTCACAGAAAAAT
TCTTGGTAGACCGTTCCGGTCACGTCCGTTACCGTCATGCGTCGTGAGTTTTGAGCCTTGCCGGTCGGTGCCCCAACAAGTTCACTGATCACGTCCTTGTGTATTTAGAAAACCACCAAA
CCCGAAGCTCTCGAGAAGGAAATCGAAGAGCTCCTTGGTGAATCAGCCAAAGCTTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGTCCTCCTCGCCGTTTTACAATCTCGCAGTCCCGATGCCGAATGGTTCTGAATATAAACTTGTGGATACGAAGGGCAAGGTAGTCTTAATCGTCAACGTCGCTTCTAAGTGCGGATTC
ACACCCCAATACGAAGGATTAGAGAAGCTTTGGCAGAAATACAAAGACAAAGACTTCATCATCATTGGGTTCCCATGCAATCAGTTTGGAGGGCAAGAGCCTGGGACGGACGAGGTAGTG
GCTAGCTTCTGTAAATTGAATTACGGGGTGAGCTTTCCGATCACGAAGAAGTGTGAGGTGAATGGAGACTCGGCGAGCGAAGTTTACAAATTTTTGAAGGACGAGAAACCTGGCTTGTTG
GGCCTCACTCGAATCAAATGGAACTTTGAGAAATTCTTGGTAGACCGTTCCGGTCACGTCCGTTACCGTCATGCGTCAACCACCAAACCCGAAGCTCTCGAGAAGGAAATCGAAGAGCTC
CTTGGTGAATCAGCCAAAGCTTGA

Retrieve as FASTA