Entry information : GaPrx28
Entry ID 1176
Creation 2008-11-29 (Christophe Dunand)
Last sequence changes 2012-05-07 (Christophe Dunand)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2012-05-07 (Christophe Dunand)
Peroxidase information: GaPrx28
Name GaPrx28
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Malvaceae Gossypium
Organism Gossypium arboreum    [TaxId: 29729 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GaPrx28
start..stop
S start..stop
PcoPrx07 136 6e-43 1..113 15..125
GmPrx59 141 1e-42 8..113 7..111
LjPrx70 135 1e-40 1..113 1..112
HargPrx09 131 4e-40 12..113 8..106
Literature and cross-references GaPrx28
Literature Wing,R.A. et al., unpublished
Protein sequence: GaPrx28
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   113 (89)
PWM (Da):   %s   12074.05 (9473.7)  
PI (pH):   %s   7.39 (7.34) Peptide Signal:   %s   cut: 25 range:25-113
Sequence
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Send to Peroxiscan
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MSSQTPSLFC LLLFLLLTLS PSHAQLGVGY YHNLCPGVES IVKSAVKQKL EQTFVTAPAT LRLFFHDCFV RGCDASVMLA SSWNRSAEKD DTGSLSVAGD GWDAGVKAGA RWD 

Retrieve as FASTA  
Remarks Partial sequence from EST (probably DNA, intron 1). Large 3' end is missing.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGTTCTC AGACCCCGAG TCTCTTTTGC CTACTCCTGT TTCTCCTCCT TACTTTGAGT CCGAGCCATG CTCAACTCGG GGTCGGTTAC TATCACAACT TGTGTCCTGG CGTTGAATCA  ATCGTCAAAT CTGCAGTTAA ACAGAAGTTG GAGCAGACAT TTGTTACAGC TCCAGCAACT CTTAGACTAT TCTTTCATGA CTGTTTCGTC CGGGTTTATC CTTTGCCTTT GCCACCGTTG  TTTTCTATGT TTAATCAGAA TCAGATTAAG AGGGCACTTA CATATTTATT TTGCATGTTG AAAGGGGTGT GATGCTTCGG TGATGCTAGC TTCTTCATGG AACAGGAGTG CAGAGAAGGA 
TGATACGGGT AGTCTTTCGG TGGCTGGGGA TGGATGGGAC GCAGGGGTGA AAGCCGGGGC TAGGTGGGAT 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGTTCTC AGACCCCGAG TCTCTTTTGC CTACTCCTGT TTCTCCTCCT TACTTTGAGT CCGAGCCATG CTCAACTCGG GGTCGGTTAC TATCACAACT TGTGTCCTGG CGTTGAATCA  ATCGTCAAAT CTGCAGTTAA ACAGAAGTTG GAGCAGACAT TTGTTACAGC TCCAGCAACT CTTAGACTAT TCTTTCATGA CTGTTTCGTC CGGGGGTGTG ATGCTTCGGT GATGCTAGCT 
TCTTCATGGA ACAGGAGTGC AGAGAAGGAT GATACGGGTA GTCTTTCGGT GGCTGGGGAT GGATGGGACG CAGGGGTGAA AGCCGGGGCT AGGTGGGAT 

Retrieve as FASTA  
cDNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGTTCTC AGACCCCGAG TCTCTTTTGC CTACTCCTGT TTCTCCTCCT TACTTTGAGT CCGAGCCATG CTCAACTCGG GGTCGGTTAC TATCACAACT TGTGTCCTGG CGTTGAATCA  ATCGTCAAAT CTGCAGTTAA ACAGAAGTTG GAGCAGACAT TTGTTACAGC TCCAGCAACT CTTAGACTAT TCTTTCATGA CTGTTTCGTC CGGGGGTGTG ATGCTTCGGT GATGCTAGCT 
TCTTCATGGA ACAGGAGTGC AGAGAAGGAT GATACGGGTA GTCTTTCGGT GGCTGGGGAT GGATGGGACG CAGGGGTGAA AGCCGGGGCT AGGTGGGAT 

Retrieve as FASTA