Entry information : AmaGPx01 (AMAG_14623)
Entry ID 11789
Creation 2013-04-24 (Christophe Dunand)
Last sequence changes 2013-04-24 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2013-06-06 (Christophe Dunand)
Peroxidase information: AmaGPx01 (AMAG_14623)
Name (synonym) AmaGPx01 (AMAG_14623)
Class Fungi-Bacteria glutathione peroxidase    [Orthogroup: Gpx3001]
Taxonomy Eukaryota Fungi Blastocladiomycota Blastocladiomycetes Blastocladiaceae Allomyces
Organism Allomyces macrogynus    [TaxId: 28583 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AmaGPx01
start..stop
S start..stop
AmaGPx02 333 1.25e-119 1..161 1..161
AmaGPx03 274 1.31e-95 3..162 48..206
AmaGPx04 273 4.05e-95 3..162 48..206
CangGPx01 270 7.88e-94 5..161 70..226
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '11789' 'complement(join(230296..230404,230470..230592,230662..230779,230845..230980))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 230845..230980 134 N° 2 230662..230779 116 N° 3 230470..230592 121 N° 4 230296..230404 107
complement(join(230296..230404,230470..230592,230662..230779,230845..230980))


exon

Literature and cross-references AmaGPx01 (AMAG_14623)
Cluster/Prediction ref. Broad:   S7000007216946126
Protein sequence: AmaGPx01 (AMAG_14623)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   161 (335)
PWM (Da):   %s   18262.32 (34867.1)  
PI (pH):   %s   6.68 (4.05) Peptide Signal:   %s   cut: 21 range:21-355
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MNAPDFYSLSSLDAKKNEVSFEQFKGKVVLIVNVASKCGFTPQYDGLEKLYQTHKDQGLVILGFPSNQFGSQEPGTEEEITSFCRLNYGVTFPIMAKTDVNGDHEHPVYHWLKSQKSGLL
GLTRIKWNFEKFLINKEGQVVHRYSSLTKPEDIEKDIVALL*

Retrieve as FASTA  
Remarks complete sequence from genomic (4 introns). Incorrect prediction from Broad (extra first intron and very short first exon).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAATGCACCAGACTTCTACTCGCTCTCGTCGCTCGACGCCAAGAAGAACGAGGTCTCGTTCGAGCAGTTCAAGGGCAAGGTCGTGCTCATTGTCAACGTTGCCAGCAAGTGCGGCTTC
ACGCCCCAGTACGATG
GTGCGTCGCATGCTGCCTCGTCGACCGCACCAGACCGTCGCTGACCTGACCACCAACTCGATCAGGTGTCTCGAGAAGCTCTACCAGACGCACAAGGACCAGGG
CCTCGTGATTCTCGGCTTCCCGTCGAACCAGTTTGGCTCGCAGGAGCCCGGCACCGAGGAGGAGATCACGAGCTTCTGCCG
GTGCGCACTGGCGGCCTGGTCGCGTTCACTTGGCCGTTC
CCTCAACTGACGGACCTCGTTCCGCACTAGCCCCTGAACTACGGCGTCACGTTCCCGATCATGGCCAAGACCGACGTCAACGGCGACCACGAGCACCCCGTCTACCACTGGCTCAAGAGC
CAGAAATCGGGTCTCCTCGGTCTGACGCGCATCAA
GTACGTGCCGCGCGCGCATTCTCGCCGCTTCGATTGATCTGCGCTGACGCTGTTCGTCGGTCTAGGTGTGGAACTTTGAGAAGTT
CCTCATCAACAAGGAGGGCCAGGTCGTGCACCGCTACTCGTCGCTCACCAAGCCCGAGGACATTGAGAAGGACATTGTCGCCCTGCTGTAA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAATGCACCAGACTTCTACTCGCTCTCGTCGCTCGACGCCAAGAAGAACGAGGTCTCGTTCGAGCAGTTCAAGGGCAAGGTCGTGCTCATTGTCAACGTTGCCAGCAAGTGCGGCTTC
ACGCCCCAGTACGATG
GTCTCGAGAAGCTCTACCAGACGCACAAGGACCAGGGCCTCGTGATTCTCGGCTTCCCGTCGAACCAGTTTGGCTCGCAGGAGCCCGGCACCGAGGAGGAGATC
ACGAGCTTCTGCCG
CCTGAACTACGGCGTCACGTTCCCGATCATGGCCAAGACCGACGTCAACGGCGACCACGAGCACCCCGTCTACCACTGGCTCAAGAGCCAGAAATCGGGTCTCCTC
GGTCTGACGCGCATCAA
GTGGAACTTTGAGAAGTTCCTCATCAACAAGGAGGGCCAGGTCGTGCACCGCTACTCGTCGCTCACCAAGCCCGAGGACATTGAGAAGGACATTGTCGCCCTG
CTGTAA

Retrieve as FASTA