Sequence Properties
first value : protein
second value (mature protein)
|
Length (aa):  |
410 (279) |
| PWM (Da): |
41619.97 (29652.8) |
|
| PI (pH):
| 4.97 (4.94) |
Peptide Signal:
| cut: 22 range:22-300 |
|
Sequence 0
Send to BLAST
Send to Peroxiscan
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| .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
MYYSGPDTAV SACSASSSTT SSSPAVTSSS TSTASATSTT LSTLTTTSTT SVSSSSSSIS SSTSTILTSS SSTPSSSSTS STTTSTSSSQ ISSSTSSSST SSSTLIVTTT STISSTTTSS
RTSTSTSPAS TVCPSFWSNV VSDLAPQMRI DGQCTNLARA AIRYAFHDAA TYSSKLPTYA PASGGADGSL LLSANEINRT DNDGLHDYHG TIKQKLADYQ AAGYAIGAAD LIQVAGALGV
KACPGGQIGR VLVGRTDTTT AAPDGLLPQA FGPGSDHDTI FQLFSDKGFT ARDLAALLGA HSTSIANFEA ANGIPVGTPQ DDTPGLWDVS YYNETYYPVS GMARFDSDIN LSQNVSSAVG
KQFKSFVGQQ GAWGASFSSA YQALSLLGIS SRAQRTMQDC SILVANAFPS
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Retrieve as FASTA
|
|
| Remarks |
Complete sequence from genomic (no intron). Incorrect prediction from JGI (5' end is missing). |
DNA ►
Send to BLAST
|
| .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGTACTATT CCGGTCCCGA TACAGCTGTT TCAGCATGCT CAGCATCAAG CTCGACTACT TCATCATCGC CTGCTGTCAC GAGCAGCAGC ACAAGTACGG CCAGCGCTAC CTCAACGACA
CTTTCGACAC TTACTACAAC GAGCACGACG TCGGTGTCTT CATCGAGTTC AAGCATTTCC AGCTCAACAA GTACGATCCT GACAAGTTCA TCGAGTACGC CCAGCTCGTC CAGTACAAGC
TCAACGACCA CAAGCACTTC TAGCTCCCAG ATATCGTCGA GTACATCCAG CTCATCAACT TCTTCATCAA CATTAATCGT CACAACGACG TCGACAATAT CATCCACGAC AACGTCCTCC
AGGACATCAA CATCAACATC TCCAGCATCA ACAGTCTGTC CAAGCTTCTG GTCAAACGTC GTTTCCGACC TAGCACCCCA AATGCGAATC GATGGACAGT GTACAAATCT GGCAAGAGCG
GCCATCAGAT ACGCTTTCCA CGACGCAGCA ACCTACTCCT CCAAACTCCC GACTTACGCC CCAGCTTCCG GAGGCGCAGA TGGCTCCCTA CTCCTCTCAG CCAACGAAAT CAACCGCACA
GACAATGATG GTCTACACGA CTATCATGGA ACCATCAAGC AAAAGCTCGC AGACTACCAA GCTGCAGGCT ACGCCATCGG CGCCGCAGAC CTTATCCAAG TCGCCGGCGC ACTAGGAGTC
AAAGCCTGTC CAGGAGGCCA AATCGGTCGA GTCCTCGTAG GACGCACCGA CACCACAACT GCCGCACCAG ACGGCCTCCT ACCACAAGCC TTCGGCCCCG GCTCCGACCA CGACACAATC
TTCCAGCTCT TCAGCGACAA AGGCTTCACC GCACGAGATC TCGCAGCTCT CTTGGGCGCC CACAGCACTT CGATCGCCAA CTTCGAAGCC GCGAACGGGA TTCCCGTGGG AACCCCTCAA
GACGACACTC CCGGTCTATG GGACGTGTCA TACTACAACG AGACCTACTA CCCCGTATCC GGCATGGCGC GGTTCGATAG CGATATCAAT TTGAGTCAGA ATGTTAGTAG TGCGGTGGGA
AAGCAGTTCA AGAGTTTTGT GGGCCAGCAG GGGGCTTGGG GAGCGAGCTT TTCGAGTGCC TACCAGGCGT TGAGTCTGTT GGGGATTTCC AGTAGGGCGC AGAGGACGAT GCAGGATTGT
TCGATTTTGG TGGCGAATGC TTTCCCTAGC TGA
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Retrieve as FASTA
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|
CDS►
Send to BLAST
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| .........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2 |
ATGTACTATT CCGGTCCCGA TACAGCTGTT TCAGCATGCT CAGCATCAAG CTCGACTACT TCATCATCGC CTGCTGTCAC GAGCAGCAGC ACAAGTACGG CCAGCGCTAC CTCAACGACA
CTTTCGACAC TTACTACAAC GAGCACGACG TCGGTGTCTT CATCGAGTTC AAGCATTTCC AGCTCAACAA GTACGATCCT GACAAGTTCA TCGAGTACGC CCAGCTCGTC CAGTACAAGC
TCAACGACCA CAAGCACTTC TAGCTCCCAG ATATCGTCGA GTACATCCAG CTCATCAACT TCTTCATCAA CATTAATCGT CACAACGACG TCGACAATAT CATCCACGAC AACGTCCTCC
AGGACATCAA CATCAACATC TCCAGCATCA ACAGTCTGTC CAAGCTTCTG GTCAAACGTC GTTTCCGACC TAGCACCCCA AATGCGAATC GATGGACAGT GTACAAATCT GGCAAGAGCG
GCCATCAGAT ACGCTTTCCA CGACGCAGCA ACCTACTCCT CCAAACTCCC GACTTACGCC CCAGCTTCCG GAGGCGCAGA TGGCTCCCTA CTCCTCTCAG CCAACGAAAT CAACCGCACA
GACAATGATG GTCTACACGA CTATCATGGA ACCATCAAGC AAAAGCTCGC AGACTACCAA GCTGCAGGCT ACGCCATCGG CGCCGCAGAC CTTATCCAAG TCGCCGGCGC ACTAGGAGTC
AAAGCCTGTC CAGGAGGCCA AATCGGTCGA GTCCTCGTAG GACGCACCGA CACCACAACT GCCGCACCAG ACGGCCTCCT ACCACAAGCC TTCGGCCCCG GCTCCGACCA CGACACAATC
TTCCAGCTCT TCAGCGACAA AGGCTTCACC GCACGAGATC TCGCAGCTCT CTTGGGCGCC CACAGCACTT CGATCGCCAA CTTCGAAGCC GCGAACGGGA TTCCCGTGGG AACCCCTCAA
GACGACACTC CCGGTCTATG GGACGTGTCA TACTACAACG AGACCTACTA CCCCGTATCC GGCATGGCGC GGTTCGATAG CGATATCAAT TTGAGTCAGA ATGTTAGTAG TGCGGTGGGA
AAGCAGTTCA AGAGTTTTGT GGGCCAGCAG GGGGCTTGGG GAGCGAGCTT TTCGAGTGCC TACCAGGCGT TGAGTCTGTT GGGGATTTCC AGTAGGGCGC AGAGGACGAT GCAGGATTGT
TCGATTTTGG TGGCGAATGC TTTCCCTAGC TGA
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Retrieve as FASTA
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