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Entry information : GmarCIIBC06
Entry ID 11876
Creation 2013-05-23 (Nizar Fawal)
Last sequence changes 2017-04-27 (Catherine Mathe)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2017-04-27 (Catherine Mathe)
Peroxidase information: GmarCIIBC06
Name GmarCIIBC06
Class Other class II peroxidase type C    [Orthogroup: CIIBC001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Cortinariaceae Galerina
Organism Galerina marginata    [TaxId: 109633 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmarCIIBC06
start..stop		 S start..stop
GmarCIIBC09 586 0 1..354 1..356
GmarCIIBC12 585 0 1..354 1..354
GmarCIIBC14 571 0 1..354 1..354
HsubCIIBC02 568 0 1..354 1..354
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 74302..74428 125 N° 2 74184..74248 63 N° 3 74074..74135 60 N° 4 73907..73962 54
N° 5 73836..73848 11 N° 6 73721..73786 64 N° 7 73546..73667 120 N° 8 73398..73492 93
N° 9 73327..73341 13 N° 10 73245..73270 24 N° 11 73169..73183 13 N° 12 73066..73116 49
N° 13 72932..73011 78 N° 14 72843..72878 34 N° 15 72701..72789 87 N° 16 72567..72644 76
N° 17 72442..72510 67  
complement(join(72442..72510,72567..72644,72701..72789,72843..72878,72932..73011 ,73066..73116,73169..73183,73245..73270,73327..73341,73398..73492,73546..73667,7 3721..73786,73836..73848,73907..73962,74074..74135,74184..74248,74302..74428))


exon

Literature and cross-references GmarCIIBC06
DNA ref. JGI genome:   scaffold_65 (74428..72442)
Cluster/Prediction ref. JGI gene:   106718
Protein sequence: GmarCIIBC06
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   354 (332)
PWM (Da):   %s   36865.64 (34561.4)  
PI (pH):   %s   5.07 (4.91) Peptide Signal:   %s   cut: 23 range:23-354
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAFARLTALISIAFAASQVATAALTKRVTCSNGHVTANAACCNLFPIVDKIQADLFDGGECGEEAHSALRLAFHDAIGFSIHGQPGGGADGSILVFNATELKFHANGGIDDITARQFPVF
QETGLTPGDFVHLAAAIGTGNCPGAPRLNFFFGRAPPRAPAPDLTVPEPTDSVTAILARFADAGFSPAEAVALLSSHTIAAADVVDPTIPGTPFDSTVGTFDSQVFLEVLLKGRLFPGNG
SQTGEVLSPIAGEMRLQSDFAISQDARTACLWQNMINNQNLMTTQFKSAMSKLQVLGQPRLIDCSDVVPVPKPFAGPIKFPASFSQADVQIACKQSPFPSLATVAGPAPTVPPV*

Retrieve as FASTA  
Remarks complete sequence from genomics (16 introns). Error in JGI prediction : small exon is missing
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTTCGCTCGCTTGACCGCTCTCATCTCAATCGCGTTCGCTGCCTCTCAAGTAGCGACTGCTGCCCTCACCAAACGCGTTACATGTTCGAATGGTCATGTAACTGCTAATGCAGCA
TGTTGCAGTCAGTACTCATCCTTTGCCTCAGTAAACTCTGGCCTCAATGCTTTGTTTTAGATATCTCTTCCCAATCGTCGACAAAATTCAAGCCGATCTTTTCGACGGTGGTGAATGTGG
AGAGGAGGTTCGTGATACACGGGATTTATTTTTACACACTCTGACATTAATCCAGGCGCCCACTCTGCGCTTCGTCTTGCGTTCCACGACGCAATTGGCTTCTCGATTCACGGTCAGCCG
TCTTTTGATTACTTTATTAACTCATTTTTGATGTTCTCGTGCTTACTTATAGGTGGAAAGTTAGTGTTTTCGCTGTTATTTTCCTTAAATAATCTGACTTCTGCCTAAAGAGAGGTGGAG
GAGCTGATGGTTCTATCCTCGTCTTCAACGCGACAGAGCTGAAATTCCGTAAGTAGTTTTGTTCGTCATAACCCTTTCTCGTCCTGACACTCTATCCCGTATCCAGATATGCAAACGGAG
GGTAAGCTCAAATTCATTAATTGACGAAATTTCTTATCAAAATCGCTCAGTATATTGACGATATTACGGCCCGCCAATTTCCTGTCTTCCAAGAAACTGGCTTGACACCTGGTGACTTGT
AAGTGCAAGGCCTTTGAATTAAGGATGGATAATGACTTTCGCGTGTAATAGTGTGTTCATCTCGCGGCCGCCATCGGCACAGGTAACTGCCCTGGTGCTCCAAGGCTCAACTTCTTCTTC
GGACGTGCCCCTCCTAGAGCCCCGGCACCCGATCTTACCGTCCCCGAGCCCACAGGTTGGCAACACGATTTTCCGTTTTGACTAATTTAATTTGTGTACGTTTAACAGACACAGCGTCAC
GGCGATTCTAGCTAGGTTTGCGGACGCTGGTTTCAGTCCAGCTGAAGCCGTTGCACTCCTTTCATCTCACACCATTGCTGCCGCTGTGAGTTTATAACCTAAGTTTAAACTCGTCACTAT
TGCTAAATCTGTTTGCTATAGGAGATGTTGTTGACCCGGTACATAACCTGCTCAGTTCTTATTGAATTAGAAATTGACTACCTTGATTCAATAGACACCATCCCAGGAACTCCGTTTGAC
TCGTAAGTTCGCTTTCCTGGTTACAGTTTCAAAGTTGTCTGACCAATATTGATACAATGATAGCACACCGTTGGTACATTGTAAGCTTATGTTGCTCCATATCCTCCTTGAAGCTTACAC
ACGGACCAAAAGTGTGACTCCCAAGTCTTCCTCGAGGTTCTACTGAAGGGACGCCTATTCCCTGGGTACATAACTTACAAATATTTTCCCTCAGTGTGCTGATTTCTCAACCCTTGCAGA
AAAACGGGAGCCAAACTGGTGAAGTTCTTTCCCCCATCGCCGGTGAAATGCGTCTGCAAAGCGATTTCGCTATCTCTCAAGGTTTGGACCTGCTGTAATTTTTGGGCGTTAGGATGTTAA
TTCAAAATGTACAGATATGCTCGCACTGCTTGCTTGTGGCAAAACATGATCAGTATGTATCCTATAAAGCTTTCTCGCTCTACTTGTTGATAACACACTTCATAGACACAATCAGAATTT
GATGACGACACAGTTCAAGAGTGCTATGAGCAAACTTCAAGTTCTTGGCCAGCCCAGACTCATAGACTGCTCTGACGTACGTTCATTTTACTAAACGAGCCCTCGTTCGACTTCATATCC
TTGACCTTTCAGGTGTTGTCCCTGTGCCCAAACCATTCGCTGGCCCCATCAAATTCCCCGCCAGCTTCTCGCAGGCTGATGTTCAGATCGCCGTGAGTACTAGCCGAAAACTGTAGCTTC
CTCGCATTTACATAATTTGCCATGATAGTGTGCAAGCAATCCCCATTCCCAAGCCTTGCAACCGTAGCGGGTCCTGCTCCCACAGTCCCACCCGTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCTTCGCTCGCTTGACCGCTCTCATCTCAATCGCGTTCGCTGCCTCTCAAGTAGCGACTGCTGCCCTCACCAAACGCGTTACATGTTCGAATGGTCATGTAACTGCTAATGCAGCA
TGTTGCAATCTCTTCCCAATCGTCGACAAAATTCAAGCCGATCTTTTCGACGGTGGTGAATGTGGAGAGGAGGCCCACTCTGCGCTTCGTCTTGCGTTCCACGACGCAATTGGCTTCTCG
ATTCACGGTCAGCCAGGTGGAGGAGCTGATGGTTCTATCCTCGTCTTCAACGCGACAGAGCTGAAATTCCATGCAAACGGAGGTATTGACGATATTACGGCCCGCCAATTTCCTGTCTTC
CAAGAAACTGGCTTGACACCTGGTGACTTTGTTCATCTCGCGGCCGCCATCGGCACAGGTAACTGCCCTGGTGCTCCAAGGCTCAACTTCTTCTTCGGACGTGCCCCTCCTAGAGCCCCG
GCACCCGATCTTACCGTCCCCGAGCCCACAGACAGCGTCACGGCGATTCTAGCTAGGTTTGCGGACGCTGGTTTCAGTCCAGCTGAAGCCGTTGCACTCCTTTCATCTCACACCATTGCT
GCCGCTGATGTTGTTGACCCGACCATCCCAGGAACTCCGTTTGACTCCACCGTTGGTACATTTGACTCCCAAGTCTTCCTCGAGGTTCTACTGAAGGGACGCCTATTCCCTGGAAACGGG
AGCCAAACTGGTGAAGTTCTTTCCCCCATCGCCGGTGAAATGCGTCTGCAAAGCGATTTCGCTATCTCTCAAGATGCTCGCACTGCTTGCTTGTGGCAAAACATGATCAACAATCAGAAT
TTGATGACGACACAGTTCAAGAGTGCTATGAGCAAACTTCAAGTTCTTGGCCAGCCCAGACTCATAGACTGCTCTGACGTTGTCCCTGTGCCCAAACCATTCGCTGGCCCCATCAAATTC
CCCGCCAGCTTCTCGCAGGCTGATGTTCAGATCGCCTGCAAGCAATCCCCATTCCCAAGCCTTGCAACCGTAGCGGGTCCTGCTCCCACAGTCCCACCCGTGTAA

Retrieve as FASTA