1. Browse the Database
  2. View Redoxidase
Entry information : GmarCIIBC16
Entry ID 11893
Creation 2013-05-24 (Nizar Fawal)
Last sequence changes 2013-05-24 (Nizar Fawal)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2017-04-19 (Catherine Mathe (Scipio))
Peroxidase information: GmarCIIBC16
Name GmarCIIBC16
Class Other class II peroxidase type C    [Orthogroup: CIIBC002]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Cortinariaceae Galerina
Organism Galerina marginata    [TaxId: 109633 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GmarCIIBC16
start..stop		 S start..stop
GmarCIIBC03 531 0 1..344 1..358
GmarCIIBC15 519 0 1..345 1..350
GmarCIIBC08 517 0 1..344 1..348
GmarCIIBC11 489 5.12e-175 3..345 4..359
Gene structure Fichier Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3173867..3173993 125 N° 2 3173750..3173814 63 N° 3 3173647..3173701 53 N° 4 3173460..3173520 59
N° 5 3173275..3173340 64 N° 6 3173092..3173213 120 N° 7 3172940..3173034 93 N° 8 3172838..3172878 39
N° 9 3172672..3172722 49 N° 10 3172539..3172618 78 N° 11 3172446..3172481 34 N° 12 3172296..3172384 87
N° 13 3172162..3172239 76 N° 14 3172040..3172108 67  
complement(join(3172040..3172108,3172162..3172239,3172296..3172384,3172446..3172 481,3172539..3172618,3172672..3172722,3172838..3172878,3172940..3173034,3173092. .3173213,3173275..3173340,3173460..3173520,3173647..3173701,3173750..3173814,317 3867..3173993))


exon

Literature and cross-references GmarCIIBC16
DNA ref. JGI genome:   scaffold_2 (3173993..3172040)
Cluster/Prediction ref. JGI gene:   220286
Protein sequence: GmarCIIBC16
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   344 (324)
PWM (Da):   %s   36146.02 (34089.9) Transmb domain:   %s   i7-29o
PI (pH):   %s   4.25 (4.19) Peptide Signal:   %s   cut: 21 range:21-344
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTFGRLAILVGLAASQLGSAATIQRRTVTCPTGQTTANQACCALFPVIDLLQKDLFDGGECGEEAHSALRIAFHDGIGFSKQGADGSILAFNTTETGYRKNLLIDDIVASQWPIFEQSGL
SAGDFLHLAAAVGTGNCPGAPRLPYSMGRPAPVAPAPDLTVPEPTDSITDILARFADAGFVAPEVIWLLASHSIAAADKVDPTIPGTPFDSDTQFYLEVLLKGNQFPGTGQQNGEVLSPL
AGEMRLQSDFAFSQDSRTACFWQEAINDQAFIMQKFSAAMQKLQVLGQTGLTDCSDVIPIPKSFAGPISYPASFAETDVQQACTATPFPSLATVAGPAPTVPPV*

Retrieve as FASTA  
Remarks complete sequence from genomics (13 introns).
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACTTTTGGCCGTCTTGCAATCCTCGTCGGACTCGCTGCTTCCCAATTAGGCAGCGCAGCTACCATACAGAGGCGTACCGTCACCTGCCCCACAGGACAAACCACGGCTAACCAGGCC
TGCTGTGGTGAGTTCATCGTGGTTTCTTAGCCGGCAGCTCGTCTAATGAATATTTCCAGCGCGCTGTTCCCAGTTATTGATCTTCTTCAAAAGGACCTTTTTGATGGCGGAGAGTGTGGT
GAAGAGGTTGGCCTCCAGCGAATAACGTTTAATTTTGTGCTAACTATTATATAGGCGCTCATTCCGCCCTTCGTATTGCTTTCCATGACGGAATTGGCTTTTCTAAACAAGGTGACCTAT
TCTCCATTTTTTTGAACGAACTTTCGAGTTAAAACATTATTTTTTAGGCGGAAAGTAGGCACCCCCCGTTTGCTCCAGCTTAATTTTTAATTAACAACGCACTCTCTAGGGGTGGAGGCG
CGCTGACGGCTCCATTCTCGCTTTCAATACGACCGAAACTGGATACCGTAAGAATCTCCTGTTTTATTTTTTGTTCCTTATCCATATTAACCCTTCCTATCCATTCGTTATGCAGATGCA
AATAACGGGTGAGATTTTTTCCATGTGCATTGTCATCTTTCTCAAACTTAGTCGACTAGCACATTGACGACATTGTCGCGAGCCAATGGCCGATCTTCGAACAAAGCGGTCTTTCTGCTG
GAGACTTGTAAGTAGCCTGCAAGTCGTATTGTAATACAATTCTAAGCGCTGATTCGCGGGGTATAAAGCCCCTTCACCTCGCTGCAGCTGTAGGTACCGGAAACTGCCCTGGAGCCCCGC
GCCTCCCCTACTCAATGGGGCGTCCCGCTCCTGTTGCTCCGGCCCCTGACCTTACCGTCCCGGAGCCCACTGGTAAGGCATATATAATACAATTTAACGTGACCGATCCTAAACCCCGAG
AATTTTTAGACACAGCATCACCGACATACTTGCAAGGTTTGCTGATGCCGGATTCGTTGCACCAGAAGTGATCTGGCTCCTTGCTTCGCATTCAATTGCTGCTGCGGTGGGTGCTTTCTC
CCTTCCGTTAATTTGGAATAAAATATTAATGTCCAATCCTTTATCAGGAGACAAAGTTGACCCAACCATCCCAGGAACCCCGTTCGATTCGTGAGTAGCGCTTTTCCATTTACACATTTT
TGTCTCACCCCTCTTGGCAGGACCCCCGGTACTTTGTATGTGCACACCCTACTTCTGGTTATCTCTCTCCTTAAATTGTGGGCAGTGTGACACACAGTTCTACCTCGAAGTCCTCTTAAA
AGGAAACCAATTCCCTGGGTAAGTCGCGTCTTCATTTCCGCCAGAGCTTCGCGCTTATTTAGCTACATCAGAAAACCGGACAACAAAATGGCGAAGTTTTGTCCCCGCTCGCTGGTGAGA
TGCGCCTTCAAAGTGATTTCGCGTTCTCGCAAGGTCAGTGGCTTTAACGTATCTATCCTTCTTAATCGGTTTCTAACCCATAATAAAAAGATATTCCAGAACTGCCTGCTTCTGGCAAGA
GGCGATCAGTGCGTTTTTCTCGAGCACTCAAGGATGTACATGACCTCTCATAATAATCAATATATTTAGACACGACCAAGCGTTCATCATGCAGAAGTTCTCAGCAGCCATGCAGAAGCT
GCAGGTTCTGGGGCAAACTGGCCTTACCGATTGCTCTGATGTAATTCCATCCTTCCATCTAAATGATACATCTGATCTTACCCTTGCTGTACCTAGGTGTTATCCCCATTCCCAAGAGCT
TCGCTGGTCCCATCTCGTATCCCGCGAGCTTCGCCGAAACCGATGTTCAGCAAGCCGTAAGTAACCTTCTCTGCAAATAATCCCCTCATATCTAACTTCTTTCAACTAGTGTGCACGGCC
ACACCTTTCCCCAGCCTCGCGACTGTGGCCGGTCCCGCTCCTACCGTCCCACCGGTGTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACTTTTGGCCGTCTTGCAATCCTCGTCGGACTCGCTGCTTCCCAATTAGGCAGCGCAGCTACCATACAGAGGCGTACCGTCACCTGCCCCACAGGACAAACCACGGCTAACCAGGCC
TGCTGTGCGCTGTTCCCAGTTATTGATCTTCTTCAAAAGGACCTTTTTGATGGCGGAGAGTGTGGTGAAGAGGCTCATTCCGCCCTTCGTATTGCTTTCCATGACGGAATTGGCTTTTCT
AAACAAGGCGCTGACGGCTCCATTCTCGCTTTCAATACGACCGAAACTGGATACCGTAAGAATCTCCTCATTGACGACATTGTCGCGAGCCAATGGCCGATCTTCGAACAAAGCGGTCTT
TCTGCTGGAGACTTCCTTCACCTCGCTGCAGCTGTAGGTACCGGAAACTGCCCTGGAGCCCCGCGCCTCCCCTACTCAATGGGGCGTCCCGCTCCTGTTGCTCCGGCCCCTGACCTTACC
GTCCCGGAGCCCACTGACAGCATCACCGACATACTTGCAAGGTTTGCTGATGCCGGATTCGTTGCACCAGAAGTGATCTGGCTCCTTGCTTCGCATTCAATTGCTGCTGCGGACAAAGTT
GACCCAACCATCCCAGGAACCCCGTTCGATTCTGACACACAGTTCTACCTCGAAGTCCTCTTAAAAGGAAACCAATTCCCTGGAACCGGACAACAAAATGGCGAAGTTTTGTCCCCGCTC
GCTGGTGAGATGCGCCTTCAAAGTGATTTCGCGTTCTCGCAAGATTCCAGAACTGCCTGCTTCTGGCAAGAGGCGATCAACGACCAAGCGTTCATCATGCAGAAGTTCTCAGCAGCCATG
CAGAAGCTGCAGGTTCTGGGGCAAACTGGCCTTACCGATTGCTCTGATGTTATCCCCATTCCCAAGAGCTTCGCTGGTCCCATCTCGTATCCCGCGAGCTTCGCCGAAACCGATGTTCAG
CAAGCCTGCACGGCCACACCTTTCCCCAGCCTCGCGACTGTGGCCGGTCCCGCTCCTACCGTCCCACCGGTGTAA

Retrieve as FASTA