Entry information : LuDiOx200(Lus10039436|PACid:23175557)
Entry ID 12044
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-05-30 (Qiang LI)
Peroxidase information: LuDiOx200(Lus10039436|PACid:23175557)
Name LuDiOx200(Lus10039436|PACid:23175557)
Class Alpha-dioxygenase    [Orthogroup: DiOx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuDiOx200
start..stop
S start..stop
CclDiOx02 964 0 8..640 3..638
VvDiOx02 940 0 16..640 15..637
NatDiOx01 939 0 1..640 1..641
VvDiOx01 934 0 16..640 19..641
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1625494..1625604 111 N° 2 1625727..1626002 276 N° 3 1626091..1626240 150 N° 4 1626607..1626740 134
N° 5 1626828..1627041 214 N° 6 1627132..1627277 146 N° 7 1627372..1627593 222 N° 8 1627672..1627874 203
N° 9 1628032..1628275 244 N° 10 1628364..1628586 223  
join(1625494..1625604,1625727..1626002,1626091..1626240,1626607..1626740,1626828 ..1627041,1627132..1627277,1627372..1627593,1627672..1627874,1628032..1628275,16 28364..1628586)


exon

Literature and cross-references LuDiOx200(Lus10039436|PACid:23175557)
DNA ref. Phytozome 12:   scaffold33 (1625494..1628586)
Protein sequence: LuDiOx200(Lus10039436|PACid:23175557)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   641
PWM (Da):   %s   73027.21  
PI (pH):   %s   8.28
Sequence 682
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MSSLFAGYCKTLITKFIHQDFHGVVGKMKLLDAFVFLIVHSMDKKGLWHRLPVFMGLIYLELRRHLHQSYNLINVGKSSNATAGVGGFNPADYPYRTADGKYNDPKDQNAGSQYTLFGRNVMPVDQDDKILRPHPAEVASKLLSRREYKDTGKQFNMVAASWIQFMIHDWIDHLEDTKQMELIAPKDIESQCPLSSFKFYLTKQVTTGLDDIKTGTINARTSWWDGSGIYGSDASKLEKVRVFKDGKLKLGENGLLVVDEDGFAVSGEIRNSWSGVSAIHALFTMEHNSVCDMLKKENPGMGDEELYRRARLVTSAVIAKVHTIDWTVELLKTDTLLAGMRINWYGVLGKWFKDKFGHVGDPRLGGLVGLKQPQNHGVPYSLTEEFVSVYRMHPILPDEFLIRDISSITNKSLPVVEKLPVQNLLGSNGEKALSKIGFTKQMVSMGHQACGALELWNYPNWLRNVAPHDPNGRPRPDHVDLPALEVYRDRERKVARYNEFRRRMLMIPISKWEDLTDDKEAIRVLTEVYGDRMEELDLLVGMMAEKKIKGFAISETAFFIFVMMASRRLEADRFFTSYFNEETYTKKGMAWVNTTESLKDVIDRHYPGMTEKWMKSTSAFTVWDAPPEPYNPIPLYLRIP*

Retrieve as FASTA  
Remarks Complete sequence from genomic. Correct prediction.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGTCATCATTGTTTGCTGGGTATTGTAAAACCTTGATCACAAAGTTTATCCACCAGGATTTTCATGGGGTCGTCGGAAAGATGAAGCTGCTCGATGCTTTCGTGTTTTTAGTAAGAATCT
CTTCTTCTTTTTCTCTTTCTCCATGGTTAACAATTAAGATGATGATGATGAGCTTATTTATAATGATCAAAGTTACGTTCATGTTGAGTACTGTTGGTATATATGCATGCAGATTGTGCA
TTCCATGGATAAGAAGGGTCTATGGCACAGGCTGCCTGTGTTTATGGGTCTCATTTACCTGGAGCTCCGTAGACATCTTCATCAGTCATACAATTTGATCAATGTTGGGAAATCTTCAAA
TGCTACTGCTGGTGTTGGTGGTTTCAATCCAGCTGATTACCCTTATAGGACAGCAGATGGGAAATATAATGATCCCAAGGATCAAAATGCAGGCAGCCAATACACTTTGTTTGGTAGGAA
CGTTATGCCAGTTGATCAGGATGATAAG
GTACAATTGATGAACTCTGCATAGTCAATTACAAGGATTTTCTGTTTTTATCTGATTAAAACAAAAAAGATGTATGTATTTGGTGTAGATTT
TAAGACCACATCCTGCAGAAGTGGCTAGCAAACTGCTGTCAAGAAGAGAATACAAGGATACTGGAAAGCAATTCAACATGGTTGCAGCTTCCTGGATTCAGTTCATGATCCATGACTGGA
TTGATCATTTGGAGGATACCAAACAG
GTTTATCTTTATTATTATTTCCTCAACTAGCTACGTACAGGCAAGCTTTTATTCGTGATATAATTATTCTAAAACAAACTGTACAAGTCCATAG
CAGGACGTTGAGTGTTGGCAGTCGTCTATGTGATATCAAATGTTTACAGTAACTTGCTAGAGATGTTCTAATCCTCCAGATGCTGGTCACCAACTTTATCTTCATCAGATGGAACATATG
TTTTTTTTCATAAATGATGCAGCAGAAAGTGAAACCCATTACGCAGTGTTTATTTTCATAACAGCAGTTCACAGTTCCCAATTACTGCACCAACCAAGTGCTAGTAAATTAACTTCTCTT
GGAATGTCTTGTTTTTTCTGGTATTTATATAGATGGAACTGATTGCACCCAAAGATATCGAAAGTCAGTGCCCCCTTAGTTCCTTCAAGTTCTATTTGACCAAGCAAGTTACAACTGGGT
TGGATGATATCAAGACTGGTACAATAAATGCACGTACATCCTGGTG
GTATGTATACATGTACAAAACTCAATTCTTATTTATTATTTGATCATGAGTTCCAAGATATTATTTGTAACAAA
CAAATGAATGAAGGGATGGAAGTGGGATTTACGGAAGTGATGCGAGCAAGTTGGAGAAAGTGAGGGTGTTCAAAGATGGGAAGCTCAAGTTAGGTGAGAATGGGCTTCTGGTGGTTGATG
AAGATGGGTTTGCTGTATCTGGAGAAATTCGTAATTCTTGGTCTGGAGTCTCCGCCATCCATGCCCTTTTCACTATGGAGCATAATTCTGTCTGTGACATGCTCAAG
GTTTCCTTTCCAT
ACATAAGATGATCTTGTTGCTCTATATATACCCAACTGCGAACATTTAAACAACTGAAAACATCTTTGGTTGTACAGAAAGAAAACCCAGGGATGGGAGATGAAGAGTTATACAGGCGTG
CAAGACTTGTGACCTCTGCAGTGATTGCAAAGGTTCATACCATTGACTGGACTGTTGAGCTTCTCAAAACTGATACATTACTCGCCGGAATGCGAATCAACTG
GTACGTTTGATTTGTCT
CTGCTGTACTGCAGCTAGGCGCTAGCTGGTTTTTATTTATTCAACTTCACATGTACAATTTGGCCTTGTGCCTGCAGGTATGGAGTACTGGGGAAATGGTTCAAGGACAAATTTGGACAT
GTGGGTGATCCAAGACTGGGAGGACTAGTCGGTTTGAAACAGCCACAAAATCATGGAGTGCCATACTCATTGACTGAGGAATTTGTGAGTGTATACAGAATGCACCCAATTTTGCCTGAT
GAATTCCTCATCAGGGACATTTCTTCGATTACCAACAAGTCTCTTCCGGTTGTTGAAAA
GTTAGTACCATTCTCACCCTATCATCATTACAACAAAAAGATTCCCAATGACTGACTTTCT
TCCTTGTAAATGGACAGGCTGCCCGTTCAAAACTTATTAGGCTCAAATGGGGAAAAGGCATTGTCCAAAATTGGATTCACTAAGCAAATGGTCTCCATGGGTCACCAAGCATGTGGTGCT
CTTGAGCTCTGGAACTACCCCAATTGGCTTAGGAATGTAGCACCCCATGATCCTAATGGCAGACCAAGGCCTGATCATGTCGATCTACCAGCCCTTGAAG
GTACTTGCATGCACCATTTT
AAGATTCTCTACAACTTAAATTCGTAATTTCCCTCCGGTGGCGGATACAAGGGCCTCCCTTAGCCATTGTCATTCCACATCTTGATTGCCCTATTTCTTTACTTCAATTAAAGTTTTAGT
TTATGTTTGTTGAGCAGTATATAGGGACAGAGAGAGGAAAGTTGCAAGGTACAACGAGTTCCGAAGAAGGATGCTGATGATACCAATATCGAAATGGGAAGATCTCACGGATGACAAGGA
AGCTATTCGGGTGCTTACTGAAGTGTACGGTGATCGAATGGAAGAGCTAGACCTTCTAGTTGGAATGATGGCCGAGAAAAAGATCAAAGGGTTTGCTATAAGTGAAACTGCATTCTTCAT
ATTTGTCATGATGGCTTCCAG
GTATATTTATAGATAGCCGAGATTAAAAGATCATGCATAAGTTAATATACTCCTGATTAATTAAAATGTTTTTTTTGACTTATTGCAGGAGGCTGGAGG
CGGACAGGTTCTTCACGAGTTATTTCAACGAGGAAACATACACAAAGAAGGGTATGGCATGGGTGAACACAACTGAGTCTCTTAAAGATGTGATTGATCGCCACTATCCTGGAATGACTG
AGAAATGGATGAAGTCTACAAGTGCATTCACTGTTTGGGATGCACCTCCTGAACCTTATAATCCTATTCCTCTTTACCTGCGGATTCCATGA

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
TGTCATCATTGTTTGCTGGGTATTGTAAAACCTTGATCACAAAGTTTATCCACCAGGATTTTCATGGGGTCGTCGGAAAGATGAAGCTGCTCGATGCTTTCGTGTTTTTAATTGTGCATT
CCATGGATAAGAAGGGTCTATGGCACAGGCTGCCTGTGTTTATGGGTCTCATTTACCTGGAGCTCCGTAGACATCTTCATCAGTCATACAATTTGATCAATGTTGGGAAATCTTCAAATG
CTACTGCTGGTGTTGGTGGTTTCAATCCAGCTGATTACCCTTATAGGACAGCAGATGGGAAATATAATGATCCCAAGGATCAAAATGCAGGCAGCCAATACACTTTGTTTGGTAGGAACG
TTATGCCAGTTGATCAGGATGATAAG
ATTTTAAGACCACATCCTGCAGAAGTGGCTAGCAAACTGCTGTCAAGAAGAGAATACAAGGATACTGGAAAGCAATTCAACATGGTTGCAGCTT
CCTGGATTCAGTTCATGATCCATGACTGGATTGATCATTTGGAGGATACCAAACAG
ATGGAACTGATTGCACCCAAAGATATCGAAAGTCAGTGCCCCCTTAGTTCCTTCAAGTTCTATT
TGACCAAGCAAGTTACAACTGGGTTGGATGATATCAAGACTGGTACAATAAATGCACGTACATCCTGGTG
GGATGGAAGTGGGATTTACGGAAGTGATGCGAGCAAGTTGGAGAAAGTGA
GGGTGTTCAAAGATGGGAAGCTCAAGTTAGGTGAGAATGGGCTTCTGGTGGTTGATGAAGATGGGTTTGCTGTATCTGGAGAAATTCGTAATTCTTGGTCTGGAGTCTCCGCCATCCATG
CCCTTTTCACTATGGAGCATAATTCTGTCTGTGACATGCTCAAG
AAAGAAAACCCAGGGATGGGAGATGAAGAGTTATACAGGCGTGCAAGACTTGTGACCTCTGCAGTGATTGCAAAGG
TTCATACCATTGACTGGACTGTTGAGCTTCTCAAAACTGATACATTACTCGCCGGAATGCGAATCAACTG
GTATGGAGTACTGGGGAAATGGTTCAAGGACAAATTTGGACATGTGGGTG
ATCCAAGACTGGGAGGACTAGTCGGTTTGAAACAGCCACAAAATCATGGAGTGCCATACTCATTGACTGAGGAATTTGTGAGTGTATACAGAATGCACCCAATTTTGCCTGATGAATTCC
TCATCAGGGACATTTCTTCGATTACCAACAAGTCTCTTCCGGTTGTTGAAAA
GCTGCCCGTTCAAAACTTATTAGGCTCAAATGGGGAAAAGGCATTGTCCAAAATTGGATTCACTAAGC
AAATGGTCTCCATGGGTCACCAAGCATGTGGTGCTCTTGAGCTCTGGAACTACCCCAATTGGCTTAGGAATGTAGCACCCCATGATCCTAATGGCAGACCAAGGCCTGATCATGTCGATC
TACCAGCCCTTGAAG
TATATAGGGACAGAGAGAGGAAAGTTGCAAGGTACAACGAGTTCCGAAGAAGGATGCTGATGATACCAATATCGAAATGGGAAGATCTCACGGATGACAAGGAAG
CTATTCGGGTGCTTACTGAAGTGTACGGTGATCGAATGGAAGAGCTAGACCTTCTAGTTGGAATGATGGCCGAGAAAAAGATCAAAGGGTTTGCTATAAGTGAAACTGCATTCTTCATAT
TTGTCATGATGGCTTCCAG
GAGGCTGGAGGCGGACAGGTTCTTCACGAGTTATTTCAACGAGGAAACATACACAAAGAAGGGTATGGCATGGGTGAACACAACTGAGTCTCTTAAAGATG
TGATTGATCGCCACTATCCTGGAATGACTGAGAAATGGATGAAGTCTACAAGTGCATTCACTGTTTGGGATGCACCTCCTGAACCTTATAATCCTATTCCTCTTTACCTGCGGATTCCAT
GA

Retrieve as FASTA