View Redoxidase 12046

Entry information : LuGPx09(Lus10000603|PACid:23144300)

Entry ID	12046
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuGPx09(Lus10000603|PACid:23144300)

Name

LuGPx09(Lus10000603|PACid:23144300)

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuGPx09 start..stop	S start..stop
LuGPx40	298	1.17e-105	1..159	1..159
LuGPx46	274	3.03e-95	1..159	68..226
LuGPx220	273	6.89e-95	1..159	70..228
MdGPx06	260	1.22e-90	1..159	1..158

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12046' 'complement(join(26484..26672,26877..26995,27145..27206,27373..27449,27676..27726))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	27676..27726	49	N° 2	27373..27449	75	N° 3	27145..27206	60	N° 4	26877..26995	117
N° 5	26484..26672	187
complement(join(26484..26672,26877..26995,27145..27206,27373..27449,27676..27726 ))

Literature and cross-references LuGPx09(Lus10000603|PACid:23144300)

DNA ref.	Phytozome 12: scaffold645 (27726..26484)

Protein sequence: LuGPx09(Lus10000603|PACid:23144300)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	165
PWM (Da):	18687.48
PI (pH):	8

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MATNSESRKSIYDFTVKDARGNDVDLSIYKEKVLLIVNVASQCRLTNSNYTELTQLCQKYKDQGMEILAFSYNQFGSQELGNNDQIVEFACTRFKAEFPIFDKVDVNGKEVAPVYKYLKA
SKSGIFGDGIKWNFTKFLVNKEGQVVDRYAPTTSPLSIKVPEIAY*

Retrieve as FASTA

Remarks

Complete sequence from genomic. Correct prediction.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTACCAATTCCGAATCTCGTAAGTCCATCTACGACTTCACTGTTAAGGTAATTTTAATCCTAAGTGTGTTGCCTCCTTTGGTCAACGTCTGGATTTTCTGTTTGAATTTAAGTTGT
TGGAGGATGGATGATGCTTTTCTATTTTTTGAGGAGTTGGTTCCGTGGGTTTCTGGTATTGGGTTTAAGCCAAAGAGCTCTTAATACCCCTTGTGGTGGTAGACTGTGTGATATCATTTA
TTTTTGTTATTGACTTCATTTCTGTTTCGTTGTGCAGGAGATGCTAGAGGGAATGATGTTGATCTCAGTATCTACAAGGAAAAAGTTCTTTTGATCGTTAATGTTGCCTCCCAATGGTAA
GTATCAGCTTCCCCCTTTTCCTTTTCTTTTTATTGGCTCTGCCATGAATACATAGATATATAGAAGTTCCAGACAAATACAGACAGTTCTGGTTTAGTAGCTAGTGGCTCTACCATCTGG
TTCTCTGCTATGAATTATTAAGCAGTTGGTTTCTTGATGCAGCACAGATTGACCAATTCCAACTACACTGAGCTGACTCAGTTATGCCAGAAATACAAAGATCAAGGTTTTCTCTTGACC
CTTCTTCCCGATTTTTGCACTCTTTCACCTTTTATGTTCAGTCACATAAGACTGTACGAGTTCATCCTTTTTCATGTCGTTGCAAATGTTGTATGATGTGGAAGATGATTCTCTCTTAAC
TGTTCTCGGGAGCAGGTGTATGGAGATCTTGGCATTTTCTTACAATCAGTTTGGGTCTCAGGAACTAGGCAACAATGATCAAATTGTGGAGTTTGCTTGTACTCGTTTCAAGGCCGAGTT
CCCCATATTCGACAAGGTAGACTCCATATTCTTACTTGATATCTTAAGTTAACTCAAGGACAATGAATCAGTGAGCCTTATGCATAACCATTGACTGATCAAGTAAGATTGATTCTTTTA
TGAAATGTTTTGGGGTGTTGGTCTATAACCCAACGTTCAGAAAAACTTGTATAGTATAAATCAACTCGTGGTTGAACTATTGTTGATAAATTGGTACAAGGTGTTGATGTGAATGGAAAA
GAGGTTGCTCCAGTCTACAAGTACCTCAAGGCGAGCAAAAGTGGAATCTTTGGGGATGGTATCAAGTGGAACTTCACCAAGTTCCTCGTCAACAAAGAGGGTCAGGTGGTTGATCGCTAC
GCTCCTACCACCTCCCCTCTCAGCATTAAGGTACCGGAAATCGCTTACTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTACCAATTCCGAATCTCGTAAGTCCATCTACGACTTCACTGTTAAGGATGCTAGAGGGAATGATGTTGATCTCAGTATCTACAAGGAAAAAGTTCTTTTGATCGTTAATGTTGCC
TCCCAATGCAGATTGACCAATTCCAACTACACTGAGCTGACTCAGTTATGCCAGAAATACAAAGATCAAGGTATGGAGATCTTGGCATTTTCTTACAATCAGTTTGGGTCTCAGGAACTA
GGCAACAATGATCAAATTGTGGAGTTTGCTTGTACTCGTTTCAAGGCCGAGTTCCCCATATTCGACAAGGTTGATGTGAATGGAAAAGAGGTTGCTCCAGTCTACAAGTACCTCAAGGCG
AGCAAAAGTGGAATCTTTGGGGATGGTATCAAGTGGAACTTCACCAAGTTCCTCGTCAACAAAGAGGGTCAGGTGGTTGATCGCTACGCTCCTACCACCTCCCCTCTCAGCATTAAGGTA
CCGGAAATCGCTTACTAG

Retrieve as FASTA