View Redoxidase 12052

Entry information : LuGPx40(Lus10008022|PACid:23161769)

Entry ID	12052
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuGPx40(Lus10008022|PACid:23161769)

Name

LuGPx40(Lus10008022|PACid:23161769)

Class

Plant glutathione peroxidase [Orthogroup: Gpx2001]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuGPx40 start..stop	S start..stop
LuGPx220	321	2.01e-113	1..169	70..238
LuGPx46	320	2.32e-113	1..169	68..236
AlyGPx06	308	1.27e-108	1..170	67..235
PtGPx06-1	304	7.63e-108	1..169	1..168

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12052' 'join(265877..265927,266175..266251,266409..266470,266612..266730,266945..267112,267256..267297)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	265877..265927	49	N° 2	266175..266251	75	N° 3	266409..266470	60	N° 4	266612..266730	117
N° 5	266945..267112	166	N° 6	267256..267297	40
join(265877..265927,266175..266251,266409..266470,266612..266730,266945..267112, 267256..267297)

Literature and cross-references LuGPx40(Lus10008022|PACid:23161769)

DNA ref.	Phytozome 12: scaffold517 (265877..267297)

Protein sequence: LuGPx40(Lus10008022|PACid:23161769)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	172
PWM (Da):	19160.77
PI (pH):	8.42

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MATNSDSPKSIYDFTVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELTQLYQKYKDQGMEILAFPCNQFGSQEPGNNDQIVEFACTRFKAEFPIFDKVDVNGKEAAPIYKYLKA
SKGGLFGDGIKWNFTKFLVNKEGQVVDRYAPTTSPLSIEKDVKKLLGITSKQ*

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction. 5' end is missing.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTACCAATTCCGACTCTCCTAAGTCCATCTACGACTTCACTGTCAAGAGGTATTTTTAATCAAATTCAAAATTGTGTTGCCTCCCTCCTTTAACGTCTGGATTTTCTGTTTGAATT
TAGTTGTTGGAGGATGATGCTTTCCAATTTTATGAGGAGTTGGGTTTCCGTGGGTTTCTATTCTTGGGTTTAAGCCAAAGGGCTCTTCTTGACTTCTGTGGTGAATGAATACCTGTTGAC
TATTGTGTGATATCATTTATTTTTTCTTCTAATTAATTTAGTTTCTGTTGCGTTGTGCAGGATGCTAGAGGGAATGATGTTGATCTCAGTATTTATAAGGGAAAAGTTCTGTTGATTGTT
AATGTTGCCTCCCAATGTGGTGATTAATCACCTTTCCTCTTTTCCTTTCCTTTTTTTTATTAATACATAGAGGCAGAAATTCCACACAAATATGGACAGTTCTGGTTTAGTAGCTAAGTG
GCTTCACCATCTGGTTTTCTGCTATGAATTATTAACCTGTTGGTTTCTTGATGCAGTGGATTGACCAATTCCAACTATACTGAGTTGACTCAACTGTACCAGAAATACAAAGATCAAGAG
GTTTCCTCTTGACCCTTCTTCCCGGTTTTTGCATTCTTTCACCTTTATGTTCACTCACATAAGACTTCATCCTTTTTTCATGACGTTGCAAATGTTGTATGATGTGGATGGTGAATTTCT
CTTAACTCTTCTTGCGAGCAGGTATGGAGATCTTGGCTTTTCCTTGCAATCAGTTCGGGTCTCAGGAACCAGGCAACAATGATCAAATTGTGGAGTTTGCTTGTACTCGTTTCAAGGCCG
AGTTCCCCATATTCGATAAGAGGTAGGCTCCATATTCTTACTTGATATATATCTGAAGTTAACTCAAGGACAGTGAATCAATGAGCCTTATGCATAACCACCAACGGATCAAATAAGATT
GATTATTTTATGAAATGTTTTGGGGGTGTTGGTCTATAACCCAACGTTCAGAAAAACTTGTCTAGTATACTATAAATCAACTCGTGGTTGAACAATTGTTGATAAATTGGTACAAGGTTG
ATGTGAATGGAAAAGAGGCTGCTCCAATCTACAAGTACCTCAAGGCGAGCAAAGGTGGACTCTTTGGGGATGGTATCAAGTGGAACTTCACCAAGTTCCTCGTCAACAAAGAGGGTCAGG
TGGTCGATCGCTATGCTCCTACCACCTCCCCTCTCAGCATTGAGAGGTACTGGAAATCGCTTACTAGACACTCACTGATTCCTCATCTGTCAATCTGTTTGGAGTTGTTTCAATGCCAGG
TTATATTACTAAATACTAACAGAACCTTATGTTGGTTATGTATCTTTTTCTATGTGTCTGTATTTGTAGAAAGATGTGAAGAAGCTGCTTGGGATTACATCGAAGCAATGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTACCAATTCCGACTCTCCTAAGTCCATCTACGACTTCACTGTCAAGGATGCTAGAGGGAATGATGTTGATCTCAGTATTTATAAGGGAAAAGTTCTGTTGATTGTTAATGTTGCC
TCCCAATGTGGATTGACCAATTCCAACTATACTGAGTTGACTCAACTGTACCAGAAATACAAAGATCAAGGTATGGAGATCTTGGCTTTTCCTTGCAATCAGTTCGGGTCTCAGGAACCA
GGCAACAATGATCAAATTGTGGAGTTTGCTTGTACTCGTTTCAAGGCCGAGTTCCCCATATTCGATAAGGTTGATGTGAATGGAAAAGAGGCTGCTCCAATCTACAAGTACCTCAAGGCG
AGCAAAGGTGGACTCTTTGGGGATGGTATCAAGTGGAACTTCACCAAGTTCCTCGTCAACAAAGAGGGTCAGGTGGTCGATCGCTATGCTCCTACCACCTCCCCTCTCAGCATTGAGAAA
GATGTGAAGAAGCTGCTTGGGATTACATCGAAGCAATGA

Retrieve as FASTA