Entry information : LuPrx05(Lus10000003|PACid:23170978)
Entry ID 12061
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status partial
Reviewer Qiang Li
Last annotation changes 2013-05-30 (Qiang LI)
Peroxidase information: LuPrx05(Lus10000003|PACid:23170978)
Name LuPrx05(Lus10000003|PACid:23170978)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrx05
start..stop
S start..stop
LuPrx131 134 5e-41 1..67 269..335
PtPrx24 116 4e-34 1..65 258..322
RcPrx77 112 2e-32 1..65 259..323
PtPrx23 110 8e-32 1..65 258..322
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 50148..50351 204  
join(50148..50351)


exon

Literature and cross-references LuPrx05(Lus10000003|PACid:23170978)
DNA ref. Phytozome 12:   scaffold200 (50148..50351)
Protein sequence: LuPrx05(Lus10000003|PACid:23170978)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   67
PWM (Da):   %s   7229.58  
PI (pH):   %s   8.53
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MQRRGLLQSD QVLFSGGSTD GIVQEYSRNP RVFTSDFAAA MVRMGDIEPL TGSQGQVRRV CSVANAA* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Big 5' end is missing. Incorrect prediction.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAGAGGA GGGGGCTACT CCAATCGGAT CAGGTGCTTT TCAGCGGCGG TTCCACCGAC GGGATAGTGC AAGAGTATAG TAGGAATCCC AGAGTTTTCA CCTCCGATTT CGCGGCTGCT 
ATGGTTCGGA TGGGTGATAT TGAGCCCTTG ACTGGTTCTC AGGGCCAAGT TCGCAGAGTT TGTAGCGTAG CCAACGCCGC CTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAGAGGA GGGGGCTACT CCAATCGGAT CAGGTGCTTT TCAGCGGCGG TTCCACCGAC GGGATAGTGC AAGAGTATAG TAGGAATCCC AGAGTTTTCA CCTCCGATTT CGCGGCTGCT 
ATGGTTCGGA TGGGTGATAT TGAGCCCTTG ACTGGTTCTC AGGGCCAAGT TCGCAGAGTT TGTAGCGTAG CCAACGCCGC CTGA 

Retrieve as FASTA