RedOxiBase: View Perox 12081

Entry information : LuPrx129(Lus10024207|PACid:23175799)

Entry ID	12081
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuPrx129(Lus10024207|PACid:23175799)

Name

LuPrx129(Lus10024207|PACid:23175799)

Class

Class III peroxidase [Orthogroup: Prx014]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx129 start..stop	S start..stop
LuPrx55	548	0	1..273	58..330
LuPrx56	355	3.47e-124	1..272	59..323
MePrx58	351	2.37e-122	1..272	65..328
RcPrx36	351	2.61e-122	1..272	63..326

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	219051..219869	819
join(219051..219869)

Literature and cross-references LuPrx129(Lus10024207|PACid:23175799)

DNA ref.	Phytozome 12: scaffold165 (219051..219869)

Protein sequence: LuPrx129(Lus10024207|PACid:23175799)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	272
PWM (Da):	29512.82
PI (pH):	8.04

Sequence 0
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAASLIRLQF HDCFAHGCDA SVLLDQTGTS TQTEKTAIPN RRFAKTFQVI EDAKSSLERM CPGVVSCADI IAVAARDASA AVEGPTWDVK LGRRDSDAAF LSEANSDIPG PKDDLPTLIA EFQKKGLTAR EMVVLSGAHT LGFAQCFTFR DRIYDTNGTN AAVTKIIDPD FARKKRKACP AQGGDRLLAP LDVVTPKSFD NNYFKTLMRK KGLLESDQAL YSGGSTDTIV EEYSRDGNKF
STDFAAAMVK MGDIGVMTGN NGQIRKVCRR AN*

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction. 5' end is missing.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTGCGT CGTTAATCCG CCTCCAATTC CACGACTGCT TCGCCCACGG CTGCGACGCT TCGGTCCTAC TCGACCAAAC CGGAACCTCC ACCCAAACCG AGAAAACCGC CATCCCGAAT CGAAGATTCG CGAAAACCTT CCAGGTCATC GAGGACGCTA AATCTAGCCT GGAAAGGATG TGCCCTGGCG TCGTCTCTTG CGCCGACATT ATCGCGGTCG CCGCTAGAGA CGCTTCTGCC GCCGTGGAGG GACCCACCTG GGATGTGAAG CTGGGGAGAC GAGATTCGGA CGCCGCGTTT CTATCTGAAG CGAATTCGGA CATTCCCGGG CCTAAAGATG ACCTCCCGAC GCTGATTGCT GAGTTCCAGA AAAAGGGGCT TACCGCCAGG GAAATGGTTG TCTTATCGGG AGCTCATACG TTGGGATTCG CGCAGTGCTT TACGTTCCGC GACAGGATCT ACGATACTAA CGGGACGAAT GCGGCGGTGA CCAAAATTAT CGATCCCGAT TTCGCGAGGA AGAAGAGGAA GGCTTGCCCG GCGCAGGGCG GAGATAGGTT GCTGGCGCCG CTTGATGTGG TGACGCCCAA GTCGTTTGAT AATAACTATT TCAAGACGCT GATGAGGAAG AAGGGGCTTT TGGAGTCTGA TCAGGCGCTT TATAGCGGCG GCTCCACCGA TACGATTGTT GAGGAGTACA GTAGGGACGG GAACAAGTTT
AGTACGGATT TCGCGGCGGC GATGGTGAAG ATGGGTGATA TCGGAGTGAT GACTGGTAAT AATGGTCAGA TTAGGAAGGT TTGCAGGAGA GCCAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA