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Entry information : LuPrx145 (Lus10027164|PACid:23145459)
Entry ID 12093
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-03-18 (Christophe Dunand)
Peroxidase information: LuPrx145 (Lus10027164|PACid:23145459)
Name (synonym) LuPrx145 (Lus10027164|PACid:23145459)
Class Class III peroxidase    [Orthogroup: Prx007]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrx145
start..stop		 S start..stop
LuPrx203 640 0 1..325 1..324
LuPrx84 558 0 1..325 1..326
LuPrx174 553 0 1..325 1..326
MePrx24 488 1.15e-175 6..324 7..325
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12093' 'complement(join(71085..71497,71658..71820,71912..72103,72187..72393))' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 72187..72393 205 N° 2 71912..72103 190 N° 3 71658..71820 161 N° 4 71085..71497 411
complement(join(71085..71497,71658..71820,71912..72103,72187..72393))


exon

Literature and cross-references LuPrx145 (Lus10027164|PACid:23145459)
Literature Day A, Fénart S, Neutelings G, Hawkins S, Rolando C, Tokarski C. Identification of cell wall proteins in the flax (Linum usitatissimum) stem. Proteomics. 2013 13(5):812-25.
DNA ref. Phytozome 12:   scaffold472 (72393..71085)
Protein sequence: LuPrx145 (Lus10027164|PACid:23145459)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   324 (302)
PWM (Da):   %s   35417.81 (32823.5) Transmb domain:   %s   i5-24o
PI (pH):   %s   8.33 (8.57) Peptide Signal:   %s   cut: 23 range:23-324
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MEKSHLCIFTLLLAIFFATTEAQLQMNFYSQSCPKAEQIVLDYVKKHISNAPTLASPILRMHFHDCFVRGCDASVMINSTSNNTAEKAAAPNLTLRGFNFLDGIKSLLEKECPGVVSCAD
ILALTARDSVAFIGGPTWRVPTGRRDGRISNSSEALNAIPPPTSNFTTLQRLFGNVGLDLKDLVLLSAAHTIGISHCNSFSARLYNFTGRGNGQDPALDSEYATKLKMKCLNTTDNVTIV
EMDPGSFRTFDLSYFQLVQKRRGLFQSDAALSTSSTTMSLINQFGSGTVQNFFTEFALSMEKMGRINVKTGSAGEIRRNCAVVN*

Retrieve as FASTA  
Remarks Complete sequence from genomic. Experimental evidency of cell wall localization
DNA ►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGAAATCGCATCTCTGTATCTTTACTCTTCTTTTGGCAATCTTCTTTGCAACAACTGAAGCTCAGCTTCAGATGAACTTCTACTCACAGAGTTGCCCCAAAGCAGAGCAGATCGTC
CTCGATTATGTCAAGAAACACATCTCCAATGCTCCCACCCTCGCCTCCCCGATCCTCCGCATGCATTTCCACGACTGCTTCGTCAGGGTACGTACGATCGAAGTTCACCAACGTACCACT
AGGTCATCCTTACTTGATCGAGCTTGATGATGATTTTATTTTGGATGCAGGGGGGTGTGATGCTTCTGTGATGATCAACTCGACTTCTAATAATACCGCGGAGAAAGCTGCGGCTCCGAA
TTTGACTCTAAGAGGGTTCAACTTCCTCGACGGTATCAAGAGCTTGCTCGAGAAAGAGTGCCCTGGCGTCGTCTCTTGTGCTGATATTCTCGCTCTTACGGCTAGAGACTCTGTTGCTTT
TATTGTAAGCTTTTTTTACTTTTTGAAAAATCAGTTCATCTCAATAATTCGATTTTTTCTCAGATGGTTGATGAAATTATTCTTCTTTTTTTAAGGGGGTGGACCCACTTGGAGAGTTCC
GACGGGGAGAAGGGATGGGAGGATCTCGAACTCGTCGGAGGCGCTTAACGCGATCCCTCCTCCGACTAGCAACTTCACCACTCTCCAGAGGTTGTTCGGGAATGTTGGTCTCGATTTGAA
GGACTTGGTCCTCCTCTCCGGTAATTAAATGTTAGATTTATTTATATATTAATTGTTATTAGATAATTATCGGCTTGTTAGCCGAGTTATGACGTTGGATATAATAAGATTCATTTTAAA
CCATCGTGACGTTAATAATTAACACCTTTTTATTTTATGTTAAACCTTATTACTATATAGCGCGGCCCACACAATCGGGATATCTCACTGCAACTCCTTCTCTGCTCGGCTCTACAACTT
CACGGGCCGGGGCAACGGGCAGGACCCGGCCCTAGACAGTGAGTACGCGACCAAGTTGAAAATGAAGTGTCTAAACACGACCGACAACGTGACCATTGTGGAGATGGACCCGGGGAGTTT
CCGGACGTTCGACCTAAGCTACTTCCAGCTGGTCCAAAAGAGGAGAGGGTTGTTCCAATCCGACGCCGCATTGAGCACGAGTAGTACCACGATGTCGCTCATCAACCAGTTCGGTTCGGG
TACCGTTCAGAACTTCTTCACCGAGTTTGCTCTGTCTATGGAGAAGATGGGCCGGATCAATGTGAAGACCGGGTCGGCTGGTGAGATCCGGAGGAATTGTGCCGTGGTTAATTAA

Retrieve as FASTA  
CDS►
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGAGAAATCGCATCTCTGTATCTTTACTCTTCTTTTGGCAATCTTCTTTGCAACAACTGAAGCTCAGCTTCAGATGAACTTCTACTCACAGAGTTGCCCCAAAGCAGAGCAGATCGTC
CTCGATTATGTCAAGAAACACATCTCCAATGCTCCCACCCTCGCCTCCCCGATCCTCCGCATGCATTTCCACGACTGCTTCGTCAGGGGGTGTGATGCTTCTGTGATGATCAACTCGACT
TCTAATAATACCGCGGAGAAAGCTGCGGCTCCGAATTTGACTCTAAGAGGGTTCAACTTCCTCGACGGTATCAAGAGCTTGCTCGAGAAAGAGTGCCCTGGCGTCGTCTCTTGTGCTGAT
ATTCTCGCTCTTACGGCTAGAGACTCTGTTGCTTTTATTGGTGGACCCACTTGGAGAGTTCCGACGGGGAGAAGGGATGGGAGGATCTCGAACTCGTCGGAGGCGCTTAACGCGATCCCT
CCTCCGACTAGCAACTTCACCACTCTCCAGAGGTTGTTCGGGAATGTTGGTCTCGATTTGAAGGACTTGGTCCTCCTCTCCGCGGCCCACACAATCGGGATATCTCACTGCAACTCCTTC
TCTGCTCGGCTCTACAACTTCACGGGCCGGGGCAACGGGCAGGACCCGGCCCTAGACAGTGAGTACGCGACCAAGTTGAAAATGAAGTGTCTAAACACGACCGACAACGTGACCATTGTG
GAGATGGACCCGGGGAGTTTCCGGACGTTCGACCTAAGCTACTTCCAGCTGGTCCAAAAGAGGAGAGGGTTGTTCCAATCCGACGCCGCATTGAGCACGAGTAGTACCACGATGTCGCTC
ATCAACCAGTTCGGTTCGGGTACCGTTCAGAACTTCTTCACCGAGTTTGCTCTGTCTATGGAGAAGATGGGCCGGATCAATGTGAAGACCGGGTCGGCTGGTGAGATCCGGAGGAATTGT
GCCGTGGTTAATTAA

Retrieve as FASTA