View Redoxidase 12108

Entry information : LuPrx163(Lus10029201|PACid:23151818)

Entry ID	12108
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuPrx163(Lus10029201|PACid:23151818)

Name

LuPrx163(Lus10029201|PACid:23151818)

Class

Class III peroxidase [Orthogroup: Prx009]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx163 start..stop	S start..stop
LuPrx68	470	4.01e-170	1..229	102..330
PtPrx15	362	1.73e-127	1..226	103..328
EgrPrx61	351	5.52e-123	1..229	102..330
EguPrx61	350	8.26e-123	1..227	102..328

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12108' 'join(1050507..1051193)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1050507..1051193	685
join(1050507..1051193)

Literature and cross-references LuPrx163(Lus10029201|PACid:23151818)

DNA ref.	Phytozome 12: scaffold376 (1050507..1051193)

Protein sequence: LuPrx163(Lus10029201|PACid:23151818)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	228
PWM (Da):	25701.77
PI (pH):	8.45

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MVVRSKTELE LECPNVISCA DILSVATRNL VTMVGGPFYP VRLGRKDGMV SDPSRVEPNI LRPTMSISQI IGFFVSRGFT VQEMVTLMGA HTIGFSHCRE FANRLYNFSK ETPTDPSLNP
KFADGLKKLC ENYTKDPTMS AFNDVMTPGK FDNMYYQNLE KGLGLLSSDE AMYMDQRTKP FVNLYAKNES AFFQAFAQAM EKVSNYKVKT GKDGEIRHRC DQINTVKI*

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction. 5' end is missing.

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGGTGGTCC GTTCCAAGAC CGAGTTGGAG CTCGAATGCC CGAATGTGAT CTCGTGTGCG GACATTCTAT CCGTGGCAAC TCGCAACCTT GTCACAATGG TTGGTGGACC GTTCTATCCG GTCCGCCTTG GCCGGAAGGA CGGCATGGTT TCAGACCCTT CCCGGGTGGA GCCCAACATA CTCCGCCCCA CAATGTCAAT CTCTCAGATC ATCGGATTCT TTGTTTCGAG AGGGTTCACG GTTCAAGAAA TGGTAACATT GATGGGAGCG CATACGATCG GGTTCTCACA TTGTAGAGAG TTTGCTAATC GGCTTTACAA TTTCAGCAAG GAAACCCCTA CAGATCCTTC ACTCAACCCG AAATTTGCAG ACGGGCTGAA GAAACTGTGC GAAAACTATA CGAAGGACCC AACAATGAGC GCATTCAACG ACGTGATGAC CCCTGGGAAA TTTGACAACA TGTATTACCA AAATCTGGAG AAAGGTTTGG GATTGCTTTC GTCGGATGAA GCTATGTACA TGGATCAGAG AACGAAGCCT TTCGTCAACC TTTATGCAAA GAATGAGTCG GCCTTCTTCC AAGCGTTTGC TCAAGCGATG
GAGAAGGTCA GTAACTACAA GGTCAAGACA GGGAAAGATG GAGAGATCAG ACATAGGTGC GACCAGATCA ACACTGTAAA AATTTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA