Entry information : LuPrx169(Lus10030146|PACid:23172578)
Entry ID 12111
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2013-05-30 (Qiang LI)
Peroxidase information: LuPrx169(Lus10030146|PACid:23172578)
Name LuPrx169(Lus10030146|PACid:23172578)
Class Class III peroxidase    [Orthogroup: N/D] N/D
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrx169
start..stop
S start..stop
LuPrx63 128 2e-38 1..78 175..252
PtPrx39 82 7e-21 1..77 172..244
GmPrx62 80 5e-20 1..72 211..280
PpePrx54 80 6e-20 1..77 176..248
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1206219..1206455 237  
complement(join(1206219..1206455))


exon

Literature and cross-references LuPrx169(Lus10030146|PACid:23172578)
DNA ref. Phytozome 12:   scaffold19 (1206455..1206219)
Protein sequence: LuPrx169(Lus10030146|PACid:23172578)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   78
PWM (Da):   %s   8551.11  
PI (pH):   %s   7.62
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MSNFQSHGLN ITNLVALSRG HTIGVSRWVD FQNRIYNNTS NSIRPQFASS LQHNCPTATG SGDNNTQALE QTFGGFDI* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction. Very short PS.
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCCAACT TCCAATCCCA CGGCCTCAAC ATCACCAACC TCGTGGCGCT TTCGAGAGGA CACACCATCG GCGTCTCTCG TTGGGTCGAT TTCCAAAACC GGATCTACAA CAACACCTCC 
AACAGCATTC GACCCCAATT CGCTTCCTCT TTGCAACATA ATTGCCCGAC GGCCACCGGA AGCGGGGACA ACAACACCCA GGCTCTCGAG CAGACTTTCG GGGGATTTGA CATCTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGTCCAACT TCCAATCCCA CGGCCTCAAC ATCACCAACC TCGTGGCGCT TTCGAGAGGA CACACCATCG GCGTCTCTCG TTGGGTCGAT TTCCAAAACC GGATCTACAA CAACACCTCC 
AACAGCATTC GACCCCAATT CGCTTCCTCT TTGCAACATA ATTGCCCGAC GGCCACCGGA AGCGGGGACA ACAACACCCA GGCTCTCGAG CAGACTTTCG GGGGATTTGA CATCTAG 

Retrieve as FASTA