RedOxiBase: View Perox 12113

Entry information : LuPrx171 ( Lus10030149|PACid:23172538)

Entry ID	12113
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2016-01-16 (Christophe Dunand)
Sequence status	complete
Reviewer	Achraf Jemmat
Last annotation changes	2016-01-16 (Achraf Jemmat)

Peroxidase information: LuPrx171 ( Lus10030149|PACid:23172538)

Name (synonym)

LuPrx171 ( Lus10030149|PACid:23172538)

Class

Class III peroxidase [Orthogroup: Prx006]

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx171 start..stop	S start..stop
LuPrx02	599	0	3..327	2..325
LuPrx61	517	0	3..327	1..328
MePrx83	471	6e-169	13..327	3..316
LuPrx170	464	5e-167	45..327	1..283

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1225163..1225393	231	N° 2	1225757..1225948	192	N° 3	1226029..1226197	169	N° 4	1226784..1226893	110
N° 5	1228231..1228511	281
join(1225163..1225393,1225757..1225948,1226029..1226197,1226784..1226893,1228231 ..1228511)

Literature and cross-references LuPrx171 ( Lus10030149|PACid:23172538)

DNA ref.	Phytozome 12: scaffold19 (1225163..1228511)

Protein sequence: LuPrx171 ( Lus10030149|PACid:23172538)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	327 (297)
PWM (Da):	35052.36 (31989.8)
PI (pH):	5.73 (5.16)	Peptide Signal:	cut: 31 range:31-327

Sequence 368
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAAAGNSTIWVRSCLVVALLAVFGTGKCWGQLSTNFYSESCPMLMDTVRCEVESAVNKETRIAASLLRLHFHDCFVNGCDGSILLEDTNSFTGEQIAAPNNGSVRGYNVIEDIKSKVEQVCPGVVSCADILAIAARDSTVIAGGQSWEVKVGRRDSKTASFNAANSGALPGPTSSLNELINTFKDQGLSAKDMVVLSGSHTIGVARYVLFRDRIYNETNIDPSFASERQDNCPLAPNSGDDNLAPLDLKTPKSFDNNYYNNLIQQKGLLHSDQVLFNGGSTDSLVRSYSQRPKAFTADLAAAMVKMGDIKPLTGSQGEIRNVCSRPN

Retrieve as FASTA

Remarks

Complete sequence from genomic (3 introns and 1 extra 3'). Incorrect prediction from Phytozome.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTGCAGCCGGTAATTCAACTATTTGGGTACGTTCATGTTTGGTGGTGGCTTTGCTTGCGGTGTTTGGTACTGGGAAATGTTGGGGTCAGCTCTCCACAAACTTCTATTCAGAGAGC
TGCCCTATGCTGATGGACACAGTGAGGTGCGAAGTCGAATCCGCTGTCAACAAGGAAACAAGGATTGCTGCCTCTCTCCTTCGCTTGCACTTTCATGACTGTTTCGTCAACGTAATTATC
GATGTTTCTCTGTCTCTCTCTATATTTTATGAAAATCAGCTTTCATAACATAAATATAAATTTGTTTTTGTAATATAGTAGTAGACTAGTAGTGCAAACTAGACACTATAACTAGTCAAA
TCCATGCCAGTTAAAAAACAATTAAAGTGAGAGAGGCTTGAACTCTCAACCCCAGGATCACTCAGCTATGAGACCTAGACATTAGCCAATTGCACCACCACCCCTTATTGTGAAAATTAT
AACAGTTTTAGAATTGACCTTCTATGCTCTGTATGATTACAGTTTGACACTAACCACTCGATCGGCAATAATTATTATCTGCAACTTTTATTTTTTTTTACTAGTCTGAAACAGGGTTGT
GATGGGTCGATACTGTTGGAAGACACGAATTCGTTCACAGGAGAACAGATTGCTGCACCAAACAACGGGTCCGTGAGAGGATATAACGTCATTGAAGACATTAAGTCGAAAGTTGAGCAA
GTATGTCCTGGAGTAGTCTCCTGCGCAGACATCCTCGCCATCGCTGCTCGAGATTCCACCGTCATCGTAAGTAACCAATATATGCATCTTGTTCATACGTTACTTGTATTTTGATGCTAT
TGTTATGGATGGATGCATTACTGCAGGCAGGAGGGCAAAGCTGGGAAGTGAAAGTTGGAAGGAGGGATTCAAAGACGGCCAGTTTTAATGCAGCAAATAGTGGAGCGCTCCCTGGCCCTA
CATCTTCACTTAACGAGCTCATCAACACGTTCAAAGACCAAGGCCTCTCCGCCAAGGACATGGTGGTTCTATCCGGTACGTACGCTTTCAATCTTCCAGTTCATTTCACAGCGCGAATTT
GAAACTTCATTAGGTATCGGTTTTTGGACAAAAATTGGAGTCACATCCAATCCTGCATGCAAGACAAAAATAATTGCGGCGTCCAAGTCCGCGAGAATTGGAGTCCAATCCCAACTAATT
TTGGCTTGCCAATTCTGTTCCGACCGGGACAAAATTACCGATTATTACCCATTTCAGATTAAATTTGAATTTTCGTGGAATTGAACCAACCAAAAATATGGAAAACAGTTGGTTTATAGT
TATAGCTTCTTACCATGCACTAAAGGAACATGGACTTATGTATAATACAAAGCATTGCAGGGTTTAGATTACTCTCTTAATTTTAAATTTCATATATTATATTTTACTTCCCTCTGTTGA
ATTTGTTGACTTAACTTAATTAAGAACAATAATACACTTAATTAATTTCCTAACTTCAACCAACAAACCAATATCATAATTTAATGACTTCATTTTCCATTACTTCTTTTCTAAGTATGT
TGTAAATAGTTTGATAATAAATAATTCATATCTCTATGCCCCTGAATGATGATGAATATAGGATCCCACACCATCGGAGTAGCGAGGTACGTTTTGTTTAGAGACCGAATCTACAACGAG
ACCAACATTGACCCTTCATTCGCAAGCGAAAGGCAAGACAATTGCCCCTTAGCACTGATCGCCCGAATAACTACGAAGTTATTCCGACAACACAAGTGTCGTTTGTGTCCGAAGGTCCCT
CTCGTTATGCTTCTACTCGAATTCGTCAACACGGTTTAGGCTAAAAGATTTGGTTTTTGATGCTAATTATTCTAATGACTAAATTAAACTAAAAGACTTTAAGTTGATTCAAAGGAGAAA
GCGAGTTCTTGGAAGAGACGAGTCACTAAGCTCGACCGCTAGAATGCTTTCAAAACGAACAAATGTGGACCTGAATGGAATGAAAAGAATCCTACTAACACTCGTATGATTCCGCGGCAC
GATTATGCACGCGGATTTCCACTACTAGCTTCCCAACTGAGGTAGAAATTCCCTTAATCGGGCTAACTAGTAATGAACTCCAAGGAGTTCTACAAAGTGAAAGGGTGCTTTACCGGAATC
AAAAGAACCCATGAGTAATTGGAAATAGCGTTAACTTGGTCCATCAACGCCTAAGCTACTGATAACTACACCCAACTTGGTCCATTGGGTGCAAACCAGAGCGCCCGCCAATTACAACAT
GGCTTTCACTTAAAACCGAGAAAAACACAAAAGGTAGAATTAGGTTATCGGTTTACCCCACCAATAACCTAATTCTATCCTCGATTGCCAACCTACTGAATTCCTAAGCCTATCAAAAGC
AAAGGATTTCATGAATTTGACCTAATTCTAGCCACAACAAGAATTAGGTTGAACACCAAACAATCGAGACAAACTTTCATTGCAATTCAAACATCCACAAACGTCGATCTTACACATTCA
AGACAGGTTTCATAGCTTAATTCCTACATCTCATCCAAGAATCCCAAAGGATTTAGCTACTCATCATTCTAGAAGAAAGCAATGCAAAAGAAAACCTAACCATCTTCTTGCAAAGAGATA
ACGGCTTGTTTTCCTTCCAATCGATGCTCTTGATCTTCTATGAGGAACGCCGTGCAAGGGTGCACGACGTTCCCCTGCTTAAGGGTCGTGATTTGGAAGCATCCTAGAGGTGCACGGCGT
GCATAGGTGCACGGCGTGCAACCCCTCTGCTCATCCATTTCATTTCTCAATCTTCCATTCGAGCTCCAACCGTGCTCTACTTCACGTTCATTGCTTCATAACAAGACCACCTATCTCTAG
AGTACCTGTGGACAACAAATACTACAAAGAAACACATCAAATGGACCGAAACGGTCCAAATGAACGGGTCTAGGCACATAATGCCAAAACACGAAAGCACACAAGAATGAAGCTCGAACA
AACTAATAATCACTCAAAAAGCATGCATATAAGGATAGATAATTGCTAAAAATTCTAGTCTTATCAAGCACCTAACTCAGGCGACGACAACCTGGCCCCACTGGACCTCAAAACGCCGAA
GTCTTTCGACAACAACTACTACAACAACCTCATCCAGCAAAAGGGTCTTCTCCACTCCGACCAAGTCCTGTTCAACGGAGGATCAACCGATTCCCTTGTACGATCCTATAGCCAGAGACC
GAAGGCATTCACTGCAGACTTGGCCGCGGCCATGGTTAAGATGGGAGATATCAAGCCCTTAACTGGGTCTCAGGGAGAGATCAGGAACGTATGTAGCAGACCTAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA