View Redoxidase 12113

Entry information : LuPrx171 ( Lus10030149|PACid:23172538)

Entry ID	12113
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2016-01-16 (Christophe Dunand)
Sequence status	complete
Reviewer	Achraf Jemmat
Last annotation changes	2016-01-16 (Achraf Jemmat)

Peroxidase information: LuPrx171 ( Lus10030149|PACid:23172538)

Name (synonym)

LuPrx171 ( Lus10030149|PACid:23172538)

Class

Class III peroxidase [Orthogroup: Prx006]

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx171 start..stop	S start..stop
LuPrx02	599	0	3..327	2..325
LuPrx61	517	0	3..327	1..328
MePrx83	471	6.46e-169	13..327	3..316
LuPrx170	464	5.43e-167	45..327	1..283

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12113' 'join(1225163..1225393,1225757..1225948,1226029..1226197,1226784..1226893,1228231..1228511)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1225163..1225393	229	N° 2	1225757..1225948	190	N° 3	1226029..1226197	167	N° 4	1226784..1226893	108
N° 5	1228231..1228511	279
join(1225163..1225393,1225757..1225948,1226029..1226197,1226784..1226893,1228231 ..1228511)

Literature and cross-references LuPrx171 ( Lus10030149|PACid:23172538)

DNA ref.	Phytozome 12: scaffold19 (1225163..1228511)

Protein sequence: LuPrx171 ( Lus10030149|PACid:23172538)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	327 (297)
PWM (Da):	35052.36 (31989.8)
PI (pH):	5.73 (5.16)	Peptide Signal:	cut: 31 range:31-327

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAAAGNSTIWVRSCLVVALLAVFGTGKCWGQLSTNFYSESCPMLMDTVRCEVESAVNKETRIAASLLRLHFHDCFVNGCDGSILLEDTNSFTGEQIAAPNNGSVRGYNVIEDIKSKVEQV
CPGVVSCADILAIAARDSTVIAGGQSWEVKVGRRDSKTASFNAANSGALPGPTSSLNELINTFKDQGLSAKDMVVLSGSHTIGVARYVLFRDRIYNETNIDPSFASERQDNCPLAPNSGD
DNLAPLDLKTPKSFDNNYYNNLIQQKGLLHSDQVLFNGGSTDSLVRSYSQRPKAFTADLAAAMVKMGDIKPLTGSQGEIRNVCSRPN

Retrieve as FASTA

Remarks

Complete sequence from genomic (3 introns and 1 extra 3'). Incorrect prediction from Phytozome.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCTGCAGCCGGTAATTCAACTATTTGGGTACGTTCATGTTTGGTGGTGGCTTTGCTTGCGGTGTTTGGTACTGGGAAATGTTGGGGTCAGCTCTCCACAAACTTCTATTCAGAGAGC
TGCCCTATGCTGATGGACACAGTGAGGTGCGAAGTCGAATCCGCTGTCAACAAGGAAACAAGGATTGCTGCCTCTCTCCTTCGCTTGCACTTTCATGACTGTTTCGTCAACACGTAATTA
TCGATGTTTCTCTGTCTCTCTCTATATTTTATGAAAATCAGCTTTCATAACATAAATATAAATTTGTTTTTGTAATATAGTAGTAGACTAGTAGTGCAAACTAGACACTATAACTAGTCA
AATCCATGCCAGTTAAAAAACAATTAAAGTGAGAGAGGCTTGAACTCTCAACCCCAGGATCACTCAGCTATGAGACCTAGACATTAGCCAATTGCACCACCACCCCTTATTGTGAAAATT
ATAACAGTTTTAGAATTGACCTTCTATGCTCTGTATGATTACAGTTTGACACTAACCACTCGATCGGCAATAATTATTATCTGCAACTTTTATTTTTTTTTACTAGTCTGAAACAGGGTT
GTGATGGGTCGATACTGTTGGAAGACACGAATTCGTTCACAGGAGAACAGATTGCTGCACCAAACAACGGGTCCGTGAGAGGATATAACGTCATTGAAGACATTAAGTCGAAAGTTGAGC
AAGTATGTCCTGGAGTAGTCTCCTGCGCAGACATCCTCGCCATCGCTGCTCGAGATTCCACCGTCATCTCGTAAGTAACCAATATATGCATCTTGTTCATACGTTACTTGTATTTTGATG
CTATTGTTATGGATGGATGCATTACTGCAGGCAGGAGGGCAAAGCTGGGAAGTGAAAGTTGGAAGGAGGGATTCAAAGACGGCCAGTTTTAATGCAGCAAATAGTGGAGCGCTCCCTGGC
CCTACATCTTCACTTAACGAGCTCATCAACACGTTCAAAGACCAAGGCCTCTCCGCCAAGGACATGGTGGTTCTATCCGCGGTACGTACGCTTTCAATCTTCCAGTTCATTTCACAGCGC
GAATTTGAAACTTCATTAGGTATCGGTTTTTGGACAAAAATTGGAGTCACATCCAATCCTGCATGCAAGACAAAAATAATTGCGGCGTCCAAGTCCGCGAGAATTGGAGTCCAATCCCAA
CTAATTTTGGCTTGCCAATTCTGTTCCGACCGGGACAAAATTACCGATTATTACCCATTTCAGATTAAATTTGAATTTTCGTGGAATTGAACCAACCAAAAATATGGAAAACAGTTGGTT
TATAGTTATAGCTTCTTACCATGCACTAAAGGAACATGGACTTATGTATAATACAAAGCATTGCAGGGTTTAGATTACTCTCTTAATTTTAAATTTCATATATTATATTTTACTTCCCTC
TGTTGAATTTGTTGACTTAACTTAATTAAGAACAATAATACACTTAATTAATTTCCTAACTTCAACCAACAAACCAATATCATAATTTAATGACTTCATTTTCCATTACTTCTTTTCTAA
GTATGTTGTAAATAGTTTGATAATAAATAATTCATATCTCTATGCCCCTGAATGATGATGAATATAGGATCCCACACCATCGGAGTAGCGAGGTACGTTTTGTTTAGAGACCGAATCTAC
AACGAGACCAACATTGACCCTTCATTCGCAAGCGAAAGGCAAGACAATTGCCCCTTATAGCACTGATCGCCCGAATAACTACGAAGTTATTCCGACAACACAAGTGTCGTTTGTGTCCGA
AGGTCCCTCTCGTTATGCTTCTACTCGAATTCGTCAACACGGTTTAGGCTAAAAGATTTGGTTTTTGATGCTAATTATTCTAATGACTAAATTAAACTAAAAGACTTTAAGTTGATTCAA
AGGAGAAAGCGAGTTCTTGGAAGAGACGAGTCACTAAGCTCGACCGCTAGAATGCTTTCAAAACGAACAAATGTGGACCTGAATGGAATGAAAAGAATCCTACTAACACTCGTATGATTC
CGCGGCACGATTATGCACGCGGATTTCCACTACTAGCTTCCCAACTGAGGTAGAAATTCCCTTAATCGGGCTAACTAGTAATGAACTCCAAGGAGTTCTACAAAGTGAAAGGGTGCTTTA
CCGGAATCAAAAGAACCCATGAGTAATTGGAAATAGCGTTAACTTGGTCCATCAACGCCTAAGCTACTGATAACTACACCCAACTTGGTCCATTGGGTGCAAACCAGAGCGCCCGCCAAT
TACAACATGGCTTTCACTTAAAACCGAGAAAAACACAAAAGGTAGAATTAGGTTATCGGTTTACCCCACCAATAACCTAATTCTATCCTCGATTGCCAACCTACTGAATTCCTAAGCCTA
TCAAAAGCAAAGGATTTCATGAATTTGACCTAATTCTAGCCACAACAAGAATTAGGTTGAACACCAAACAATCGAGACAAACTTTCATTGCAATTCAAACATCCACAAACGTCGATCTTA
CACATTCAAGACAGGTTTCATAGCTTAATTCCTACATCTCATCCAAGAATCCCAAAGGATTTAGCTACTCATCATTCTAGAAGAAAGCAATGCAAAAGAAAACCTAACCATCTTCTTGCA
AAGAGATAACGGCTTGTTTTCCTTCCAATCGATGCTCTTGATCTTCTATGAGGAACGCCGTGCAAGGGTGCACGACGTTCCCCTGCTTAAGGGTCGTGATTTGGAAGCATCCTAGAGGTG
CACGGCGTGCATAGGTGCACGGCGTGCAACCCCTCTGCTCATCCATTTCATTTCTCAATCTTCCATTCGAGCTCCAACCGTGCTCTACTTCACGTTCATTGCTTCATAACAAGACCACCT
ATCTCTAGAGTACCTGTGGACAACAAATACTACAAAGAAACACATCAAATGGACCGAAACGGTCCAAATGAACGGGTCTAGGCACATAATGCCAAAACACGAAAGCACACAAGAATGAAG
CTCGAACAAACTAATAATCACTCAAAAAGCATGCATATAAGGATAGATAATTGCTAAAAATTCTAGTCTTATCAAGCACCTAACTCAGGCGACGACAACCTGGCCCCACTGGACCTCAAA
ACGCCGAAGTCTTTCGACAACAACTACTACAACAACCTCATCCAGCAAAAGGGTCTTCTCCACTCCGACCAAGTCCTGTTCAACGGAGGATCAACCGATTCCCTTGTACGATCCTATAGC
CAGAGACCGAAGGCATTCACTGCAGACTTGGCCGCGGCCATGGTTAAGATGGGAGATATCAAGCCCTTAACTGGGTCTCAGGGAGAGATCAGGAACGTATGTAGCAGACCTAATTAA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA