View Redoxidase 12117

Entry information : LuPrx176(Lus10032035|PACid:23161066)

Entry ID	12117
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuPrx176(Lus10032035|PACid:23161066)

Name

LuPrx176(Lus10032035|PACid:23161066)

Class

Class III peroxidase [Orthogroup: Prx031]

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx176 start..stop	S start..stop
LuPrx191	640	0	1..327	1..328
LuPrx72	495	3.67e-178	7..326	15..334
MePrx64	477	3.67e-171	11..327	9..324
PtPrx82	469	3.4e-168	11..327	6..323

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12117' 'complement(join(616106..616669,617636..617827,619270..619497))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	619270..619497	226	N° 2	617636..617827	190	N° 3	616106..616669	562
complement(join(616106..616669,617636..617827,619270..619497))

Literature and cross-references LuPrx176(Lus10032035|PACid:23161066)

DNA ref.	Phytozome 12: scaffold42 (619497..616106)

Protein sequence: LuPrx176(Lus10032035|PACid:23161066)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	327 (299)
PWM (Da):	34319.83 (31589.5)	Transmb domain:	i7-29o
PI (pH):	4.94 (4.94)	Peptide Signal:	cut: 29 range:29-327

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MGYFSSSTAAMIMIIVAITIAGGGGVSGQGLRENFYAGSCPMVEAVVQQVVAAKAGRQFPTLPATLRLFFHDCFVTGCDASVMVASPNGDAEKDAPDNLSLAGDGFDAVSRAKTAVEAIC
PGVVSCADIIAIAARDVVALAGGPTFAVELGRRDGMISSASLVAGNLPEPNMTLPELNAIFAKHNLTQFDMIALSGAHTLGFSHCNRFFDRIYSSTVDPSLNSTYAQELMTACPRDVDPS
IAIDMDPTTPRAFDNVYYQNLVEGKGMFSSDQVLFTDGRSRATVVDFARSAADFNGGFAAAMRKLGRVGVKTGSQGRIRSDCSNVNS*

Retrieve as FASTA

Remarks

Complete sequence from genomic. Correct prediction.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGGTTACTTCAGTTCCTCTACGGCGGCCATGATTATGATCATCGTGGCAATTACCATCGCCGGCGGCGGCGGCGTGTCGGGACAAGGACTGAGGGAGAATTTCTACGCGGGAAGTTGT
CCTATGGTGGAGGCGGTAGTACAGCAAGTGGTGGCGGCCAAAGCCGGCCGGCAGTTTCCCACCCTGCCAGCCACTCTCCGCCTCTTCTTCCACGATTGCTTCGTTACTGTAAGATCATCT
TCACGATATATATACATGTTCCTTTAATCACGGTCTAATTACAAGATTCATCATAGTTTGATTGAGAGATTGAAGTCTTGTCGCGGCTGGGGGATGCATGCACCGTGCCGCTCCGAGCGC
CGGCGAAGCATATATGGCCGCCGAGGCAAATAGGCATTCGTCATATATACGCGCCTTATTTAAATATATTCAGTGACTAAGTCTAATCTGTCAAATTTAATCAAGTTGGTAAATATGTGA
CGAAATTTACGTTCATTGTATTTTGAAAATTCTTAGGTTTTACATTATCTATTAAAGATATTCAAGGTAGTAGTACCACTATTTACATGTAGCGATCCTGATTTCATGTAAAATCGATAT
AAGGTGAAACATGAAATCGGACAAATTGAGTTCAAAATAGGGGAACGTACAATTCCACACGATTCTATGATTCCAATTTTTATTAGAATTTGTACTGGTTTGATTTTCGAACCAAATCGA
AGAAGTGATATTACTTTTTTAGAAAAGTTTGAAATCCTAATAAATTGAATCTCACACATAGGACGCCTTTTCTAGTTTTCCAATACTTTATACCAAGCCATCCTTTGGAATTTGGTGTGT
CGGATTTTTGTCCGTCAACACCAAATTCACTTCATCTATGATGAAGTATGCACGGCATAAGTTTTTTGTCTTATAACGAGACGACACAAACTTTCACCTTACTTATCTATTCAGTCTAAT
GGTTTCTAAACTATTTTACTATTTTAGACATCAATAATCATAAAATTTTATAATTTTGTGATTCGATTATATAATTATGATTTTTACCTCTCCTTTCGATTTAGAATCCGATTTTGATTA
CTATGCAGACATGGAAGACATTTTTTTCTTTTTTTTACTTTAAAAACAATGATAATATGATTTGATGTTTGGCCTAGTTAGTAAAAATCCATTTAATACTCAGTATAATACATGTATATG
TACTATATCCGTTTAAAACTTCCGTTCTCGTACTATTGTAGAGCTATTTAATTTTTCGACGTATGTTTGATGCTTCACGTACTAAACACGTATGAAAGAGGTATTACACGTTTAATACAC
GTATTCTAAGGAGTTGAATAGATATTTTAATATTTTTTTATTTATATTCACTTTTAAAATTATAAAATTATAAAATTTTATAATTGTTGCCGAACTTTTAAACATATTGATATGCTGGAA
TAACTTACAAAACTCTGAACGTATTAATATCGTACTATACCCGTATCGTAGGTTAGGTGTTGGCGTTGGAACAGTCCACCTAAAACTTGGATTCCTTTGTTATTCCGAGCAGCCACTGGT
TGACATTAACTGAACTGATGATAGAGACAGAGTTAGGAGCTACCTAATCAATATACAACATACGGCTTATAGTAATTTGATAAATTCATTTGGTGTTTCGCTGTTGACAGGGGGCTGCGA
TGCCTCAGTAATGGTGGCATCACCAAACGGAGACGCGGAGAAAGATGCTCCGGACAATCTTTCCCTGGCCGGCGACGGATTCGACGCCGTATCAAGAGCTAAAACAGCTGTAGAAGCTAT
ATGCCCTGGAGTCGTTTCTTGTGCAGATATCATCGCCATCGCAGCTCGTGATGTCGTTGCCTTGGTACTTAATCCTTCCACAGCACTAATCCCTTCACACTGGCTTAGCTTCCTTCAATA
TTCTAGGTGCTCACTATCGGAACCGAACCGAGCTTTACTCATCTCGGGTTTGACTCGGTTGGTTTATAGGCGAGCTCGAGTTTGACTCTGCTTCGATTCTAGCCATATAATTGAGTAGGG
CCATGGCTCAATTAATTTTGTGTGAGCTCGAGCTCACTTCAAAAACATATAGTTTTGGGGTCCGTGATTATGAGATTTTCAAATAACGGTCTTTAATTTATTGGTCACTAAAGGTCACTA
ACCTGCTGATTATTAAATTAGTGACCACTTTGACATATCAATGACCGTTTTACAAAAAAACGATCACTAACCTAATGGTCACTAAAACGGTATTTTTTGTAGTTCAGCTCAGCTTGAGAT
TGGCTCATTTGCCAGTTCCAACGAGCTTAGCTTGTTTGCGGCTCTTAATTAACAAATTCAAGCTCAACTCGGTTCGTTTACTAGTGTTAACAAGTTTTTTAAATTTTGAGCTCACCTCGG
ATATATTAATATTTTTTTTAAAATATTTTAAAATGAACTCGACTTATATAGTGTAATTAAGTAACTAATCATTAAGACAACATCATTTATCATTATATTTTTGTTTTCTAATCAAAATAA
AAACATCAAATGATCAAAATCTCTAAAACCAACTCGTAAACTACACTAGTTGCTCCAGTTAATAACTGAGCCTCAACTAAACTACTTTACGAGCCAAACACAGCGAGCTTACGAGGTGAT
TTGGCTCACGAGCTAGCCAAACTAAGCCAAATGTAACTCAAATTCAATTTGTTTAAAACCGAACCGAATTTAAATTGAGCTTTTTTCAAACTAAATTTTAATCTAAATTTTTTCGAACCA
AACATACCAGCGGCTTGGTTACTCGACACCTACGTTATAAACTTGATATATTACAATTTCACTTTTACAGGCGCAGGAGGCCCGACGTTCGCGGTGGAATTAGGGCGGAGGGACGGCATG
ATATCCAGCGCATCCCTCGTCGCCGGAAACTTGCCGGAGCCAAACATGACCTTACCCGAACTCAACGCAATATTCGCCAAACACAACCTCACCCAATTCGACATGATCGCACTTTCGGGA
GCTCACACGCTCGGCTTCTCCCACTGCAATCGCTTCTTCGATCGCATCTACTCTTCCACAGTCGACCCTTCCCTGAACTCCACCTACGCCCAGGAGCTGATGACGGCATGCCCGAGGGAC
GTGGATCCCAGCATCGCAATCGACATGGATCCGACAACTCCGAGGGCATTCGACAATGTGTATTACCAGAATCTGGTGGAGGGGAAGGGGATGTTTAGTTCCGACCAGGTTCTGTTCACG
GACGGGAGGTCTCGGGCGACGGTGGTGGATTTCGCGAGGAGTGCTGCGGATTTTAACGGTGGGTTTGCGGCGGCGATGAGGAAGCTTGGGAGAGTTGGGGTTAAGACTGGGAGTCAGGGG
AGGATTCGGAGTGACTGTTCGAATGTGAACTCTTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA