Entry information : LuPrx177 ( Lus10032170|PACid:23161274)
Entry ID 12118
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2016-02-03 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-02-03 (Christophe Dunand)
Peroxidase information: LuPrx177 ( Lus10032170|PACid:23161274)
Name (synonym) LuPrx177 ( Lus10032170|PACid:23161274)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type Embryos
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrx177
start..stop
S start..stop
LuPrx201 556 0 19..331 15..323
MePrx33 508 0 6..331 4..319
RcPrx41 506 0 28..331 23..320
CclPrx36 504 0 7..331 4..327
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1220166..1221161 996  
join(1220166..1221161)


exon

Literature and cross-references LuPrx177 ( Lus10032170|PACid:23161274)
DNA ref. Phytozome 12:   scaffold42 (1220166..1221161)
EST ref. GenBank:   JG190277.1
Protein sequence: LuPrx177 ( Lus10032170|PACid:23161274)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   332 (302)
PWM (Da):   %s   36269.21 (33044.4)  
PI (pH):   %s   8.19 (8.19) Peptide Signal:   %s   cut: 30 range:30-331
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MATQPPPHRP LILLLLSTLL LSLSTTSESS LSYNYYSKSC PRFTQIIQET VTNKQITSPT TAAGTLRLFF HDCFLNGCDA STLISSTSFN RAERDAEINL SLPGDAFDLI VRAKTALELA  CPNTVSCSDI LAVATRDLVT MVGGPFYDVP LGRLDYRVSK SSAVPGNLPL PSTPMSQMID MFAARGFSVQ EMVALSGAHT IGFSHCEEFS GDLYNTTATA GGSNYNPRFA AALQKACANY 
KKDPSISVFN DIMTPNKFDN VYYQNLPKGL GLLKSDHGLV KDDRTRPFVE IYAKDQNKFF KDFATAMQKL SVYGIKTGRR GEIRHRCDAA N* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron) and 1 EST.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTACAC AACCCCCACC ACACCGGCCG CTGATTCTCC TCCTCCTCTC CACTCTCCTC CTCAGTCTAT CCACAACCTC CGAGTCCAGC CTCTCCTACA ACTACTACTC CAAATCCTGC  CCCAGATTCA CCCAAATCAT CCAGGAAACA GTCACAAACA AGCAAATCAC CAGCCCCACC ACCGCCGCCG GCACCCTCCG CCTCTTCTTC CACGACTGTT TCCTCAACGG CTGCGACGCC  TCCACTCTAA TCTCCTCCAC CTCCTTCAAC AGAGCCGAGC GCGACGCCGA AATCAACCTC TCACTCCCAG GGGACGCCTT CGACTTAATC GTCCGTGCCA AGACCGCCCT CGAGCTTGCC  TGCCCCAACA CGGTCTCCTG CTCCGACATC CTCGCCGTCG CCACACGAGA TCTCGTCACC ATGGTCGGCG GCCCCTTCTA CGACGTCCCG CTCGGCCGCC TCGACTACCG CGTCTCCAAA  TCCTCCGCCG TTCCCGGAAA CCTCCCGCTG CCGTCGACCC CGATGTCGCA GATGATCGAC ATGTTCGCCG CCAGGGGATT CTCCGTCCAA GAGATGGTCG CTCTTAGCGG GGCCCACACC  ATCGGATTCT CCCACTGTGA AGAGTTCAGC GGAGATCTGT ACAACACCAC CGCCACGGCG GGGGGAAGTA ACTACAATCC GCGATTCGCA GCGGCGTTGC AGAAGGCGTG CGCGAATTAC  AAGAAGGACC CGTCGATCTC GGTGTTCAAC GATATAATGA CACCGAACAA ATTCGACAAT GTGTACTACC AGAACTTGCC CAAGGGGCTG GGACTGCTGA AGTCGGACCA TGGATTGGTG  AAAGACGATC GCACCCGGCC GTTTGTGGAG ATTTATGCGA AAGATCAGAA CAAGTTTTTC AAGGATTTCG CCACTGCGAT GCAGAAGCTG AGCGTGTATG GTATCAAGAC TGGGAGACGA 
GGCGAGATTA GGCACAGGTG CGATGCTGCC AACTGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCTACAC AACCCCCACC ACACCGGCCG CTGATTCTCC TCCTCCTCTC CACTCTCCTC CTCAGTCTAT CCACAACCTC CGAGTCCAGC CTCTCCTACA ACTACTACTC CAAATCCTGC  CCCAGATTCA CCCAAATCAT CCAGGAAACA GTCACAAACA AGCAAATCAC CAGCCCCACC ACCGCCGCCG GCACCCTCCG CCTCTTCTTC CACGACTGTT TCCTCAACGG CTGCGACGCC  TCCACTCTAA TCTCCTCCAC CTCCTTCAAC AGAGCCGAGC GCGACGCCGA AATCAACCTC TCACTCCCAG GGGACGCCTT CGACTTAATC GTCCGTGCCA AGACCGCCCT CGAGCTTGCC  TGCCCCAACA CGGTCTCCTG CTCCGACATC CTCGCCGTCG CCACACGAGA TCTCGTCACC ATGGTCGGCG GCCCCTTCTA CGACGTCCCG CTCGGCCGCC TCGACTACCG CGTCTCCAAA  TCCTCCGCCG TTCCCGGAAA CCTCCCGCTG CCGTCGACCC CGATGTCGCA GATGATCGAC ATGTTCGCCG CCAGGGGATT CTCCGTCCAA GAGATGGTCG CTCTTAGCGG GGCCCACACC  ATCGGATTCT CCCACTGTGA AGAGTTCAGC GGAGATCTGT ACAACACCAC CGCCACGGCG GGGGGAAGTA ACTACAATCC GCGATTCGCA GCGGCGTTGC AGAAGGCGTG CGCGAATTAC  AAGAAGGACC CGTCGATCTC GGTGTTCAAC GATATAATGA CACCGAACAA ATTCGACAAT GTGTACTACC AGAACTTGCC CAAGGGGCTG GGACTGCTGA AGTCGGACCA TGGATTGGTG  AAAGACGATC GCACCCGGCC GTTTGTGGAG ATTTATGCGA AAGATCAGAA CAAGTTTTTC AAGGATTTCG CCACTGCGAT GCAGAAGCTG AGCGTGTATG GTATCAAGAC TGGGAGACGA 
GGCGAGATTA GGCACAGGTG CGATGCTGCC AACTGA 

Retrieve as FASTA