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Entry information : AtrPrx12(AmTr_v1.0_scaffold00007.232)
Entry ID 1212
Creation 2005-06-13 (Christophe Dunand)
Last sequence changes 2005-06-13 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-11-10 (Christophe Dunand)
Peroxidase information: AtrPrx12(AmTr_v1.0_scaffold00007.232)
Name AtrPrx12(AmTr_v1.0_scaffold00007.232)
Class Class III peroxidase    [Orthogroup: Prx006]
Taxonomy Eukaryota Viridiplantae Streptophyta Amborellaceae Amborella
Organism Amborella trichopoda    [TaxId: 13333 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value AtrPrx12
start..stop		 S start..stop
AtrPrx05 640 0 1..319 1..319
VvPrx76 489 1.95e-176 1..318 1..321
CpapPrx19 486 3.43e-175 3..319 2..324
NnPrx73 484 2.24e-174 1..318 3..321
Literature and cross-references AtrPrx12(AmTr_v1.0_scaffold00007.232)
Literature dePamphilis,C., Carlson,J., Ma,H., Soltis,D., Soltis,P.,Oppenheimer,D., Frohlich,M., Doyle,J., Tanksley,S., Webb,M., Leebens-Mack,J., Landherr,L., Ilut,D. and Wall,K.
unpublished (2003)
EST ref. GenBank:   CV005110 [3' end]
Protein sequence: AtrPrx12(AmTr_v1.0_scaffold00007.232)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   318 (296)
PWM (Da):   %s   34538.54 (31981.2)  
PI (pH):   %s   9.59 (9.46) Peptide Signal:   %s   cut: 23 range:23-318
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MASSSLFVRL AFVLLLTWSS YAQLTPHYYA YSCPKALPTI RSAVKSAISN DKRVGAQLLR LFFHDCFVNG CDGSLLLDDT STFIGEKNAQ PNRNSARGFN IVDNIKSAVE KACPGVVSCA  DTLAVAARDS VVLLGGPDWQ VKLGRRDART ASQAAANNSI PPPTFNLNQL INSFANQGLS QKDMVALSGG HTLGVARCIN IRDRIYNETN IDPSFAKTRQ SNCPRTAGSG DNNVNPLELQ 
TPTAFDNKYF KNLINKKGLL HSDQQLFNGG SADSLVRSYS SNSDLFNKDF VAAMIKMGDI KPLTGSNGEI RKNCRKIN* 

Retrieve as FASTA  
Remarks Complete sequence from genomic and from 1 EST. Large part of 5’ sequence is missing. From early female flower buds
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTTCTT CCTCTCTGTT TGTTAGACTT GCATTCGTTT TGCTCCTCAC TTGGAGCTCG TATGCCCAAC TCACCCCACA CTACTATGCT TACTCTTGCC CCAAGGCATT GCCCACCATT  AGATCGGCTG TTAAATCAGC CATCTCAAAT GACAAGAGAG TTGGAGCTCA GCTTCTTCGC CTTTTCTTCC ATGACTGCTT CGTGAATGGG TGCGATGGAT CGTTGCTTCT GGATGATACG  TCCACCTTCA TTGGAGAGAA GAACGCACAA CCAAACAGGA ACTCGGCGAG AGGGTTCAAT ATTGTGGACA ACATAAAATC TGCGGTGGAG AAGGCGTGCC CTGGGGTCGT CTCATGTGCT  GATACCTTGG CCGTCGCTGC AAGAGACTCC GTTGTCTTGT TGGGAGGACC GGATTGGCAA GTGAAATTGG GAAGGAGGGA CGCGAGGACA GCGAGCCAGG CCGCTGCAAA CAACAGCATC  CCACCTCCGA CCTTCAACCT CAATCAGCTC ATCAACAGTT TCGCTAATCA AGGCCTATCT CAAAAGGACA TGGTTGCCCT CTCCGGAGGC CACACTCTTG GCGTTGCTCG CTGCATTAAC  ATCAGGGACC GCATCTACAA TGAGACCAAC ATCGACCCTT CATTTGCCAA GACTCGGCAA TCCAACTGCC CAAGGACCGC GGGCTCAGGA GACAACAACG TGAACCCTCT GGAACTTCAA  ACCCCAACGG CCTTTGACAA CAAGTATTTC AAGAACCTGA TTAACAAGAA GGGCCTTCTC CACTCTGATC AGCAGCTCTT CAATGGTGGG TCCGCCGATT CTCTTGTTCG AAGCTACAGC 
TCCAATTCAG ACTTGTTTAA TAAGGACTTT GTGGCTGCCA TGATCAAGAT GGGTGACATC AAACCTCTCA CCGGCTCTAA TGGAGAAATT CGCAAGAATT GTAGAAAGAT CAACTAA 

Retrieve as FASTA