View Redoxidase 12133

Entry information : LuPrx201 (Lus10039445|PACid:23175666)

Entry ID	12133
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2014-03-19 (Christophe Dunand)

Peroxidase information: LuPrx201 (Lus10039445|PACid:23175666)

Name (synonym)

LuPrx201 (Lus10039445|PACid:23175666)

Class

Class III peroxidase [Orthogroup: Prx002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuPrx201 start..stop	S start..stop
LuPrx177	541	0	29..324	33..332
MePrx33	508	0	9..323	4..319
RcPrx41	501	0	24..323	23..320
GhPrx27	491	1.2e-176	2..323	4..326

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1786089..1787060	970
join(1786089..1787060)

Literature and cross-references LuPrx201 (Lus10039445|PACid:23175666)

Literature	Day A, FÃ©nart S, Neutelings G, Hawkins S, Rolando C, Tokarski C. Identification of cell wall proteins in the flax (Linum usitatissimum) stem. Proteomics. 2013 13(5):812-25.
DNA ref.	Phytozome 12: scaffold33 (1786089..1787060)

Protein sequence: LuPrx201 (Lus10039445|PACid:23175666)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	323 (298)
PWM (Da):	35518.81 (32747.4)
PI (pH):	8.9 (9.02)	Peptide Signal:	cut: 26 range:26-323

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MAKLPPTPPP SLLFFFLCLA AVSESRLSYN YYDKSCPRFT QIIQETVTNK QITSPTTAAG TLRLFFHACF ANGCDSSALV SSTSFNRAER DAEINLSLPG DAFDLIIRAK TALELACPNT VSCSDILAVA TRDLVTMVGG PYYNVLLGRL DYRISKSSFV PGNLPLPSMS TSQMIAMFAA RGFSVQEMVA LSGAHTIGFS HCKEFSGLLY NGGSSGYNPR FAQALQKACA NSRKDPSVSV
FNDIMTPNKF DNVYYQNLPK GLGLLASDHA LVKDNRTRPI VEMYARDQNK FFHDFANTMQ KLSVYGIKTG RRGEIRHRCD AIN*

Retrieve as FASTA

Remarks

Complete sequence from genomic. Experimental evidency of cell wall localization.

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGGCCAAAC TACCACCAAC ACCCCCGCCG TCGCTTCTCT TCTTCTTCCT CTGCTTAGCA GCAGTCTCCG AATCCAGGCT TTCCTACAAC TACTACGACA AATCCTGCCC CAGATTCACC CAAATCATCC AGGAAACCGT CACCAACAAA CAAATCACCA GCCCCACAAC CGCCGCCGGC ACCCTCCGCC TCTTCTTCCA TGCCTGCTTC GCCAATGGCT GCGACTCCTC TGCCCTTGTC TCATCCACTT CCTTCAATCG AGCCGAGCGC GACGCCGAGA TCAACCTATC CCTCCCCGGC GACGCCTTCG ACCTTATCAT CCGCGCCAAG ACCGCCCTCG AGCTCGCCTG CCCAAACACA GTCTCCTGCT CCGACATCCT CGCCGTCGCA ACACGAGATC TTGTCACAAT GGTCGGCGGC CCTTACTACA ACGTCCTCCT CGGCCGCCTC GACTACCGCA TCTCCAAGTC TTCCTTCGTC CCCGGGAACC TCCCGCTGCC GTCGATGTCC ACCTCGCAGA TGATCGCCAT GTTCGCGGCC AGGGGATTCT CTGTCCAGGA GATGGTGGCG CTTAGCGGGG CTCACACCAT TGGGTTCTCT CACTGTAAAG AGTTCAGCGG GCTGCTCTAC AACGGGGGCT CAAGCGGATA CAATCCGAGG TTTGCGCAAG CGCTTCAGAA GGCGTGCGCC AATTCAAGGA AGGACCCGTC GGTTTCGGTG TTCAACGACA TAATGACTCC CAACAAATTC GACAATGTGT ACTACCAGAA CTTGCCCAAG GGGCTGGGTT TGCTGGCCTC GGACCACGCC CTGGTTAAAG ACAACAGGAC GCGGCCAATT GTGGAGATGT ACGCTAGGGA TCAGAACAAG TTCTTCCATG ATTTCGCCAA TACGATGCAG AAGCTGAGCG TTTACGGGAT CAAGACTGGG AGGAGAGGCG AGATTAGGCA CAGGTGTGAT
GCTATCAACT GA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA