Entry information : LuPrx201 (Lus10039445|PACid:23175666)
Entry ID 12133
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2014-03-19 (Christophe Dunand)
Peroxidase information: LuPrx201 (Lus10039445|PACid:23175666)
Name (synonym) LuPrx201 (Lus10039445|PACid:23175666)
Class Class III peroxidase    [Orthogroup: Prx003]
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrx201
start..stop
S start..stop
LuPrx177 541 0 29..323 33..331
MePrx33 508 0 9..323 4..319
RcPrx41 501 0 24..323 23..320
GhPrx27 491 1e-176 2..323 4..326
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 1786089..1787060 972  
join(1786089..1787060)


exon

Literature and cross-references LuPrx201 (Lus10039445|PACid:23175666)
Literature Day A, Fénart S, Neutelings G, Hawkins S, Rolando C, Tokarski C. Identification of cell wall proteins in the flax (Linum usitatissimum) stem. Proteomics. 2013 13(5):812-25.
DNA ref. Phytozome 12:   scaffold33 (1786089..1787060)
Protein sequence: LuPrx201 (Lus10039445|PACid:23175666)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   324 (298)
PWM (Da):   %s   35518.81 (32747.4)  
PI (pH):   %s   8.9 (9.02) Peptide Signal:   %s   cut: 26 range:26-323
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MAKLPPTPPP SLLFFFLCLA AVSESRLSYN YYDKSCPRFT QIIQETVTNK QITSPTTAAG TLRLFFHACF ANGCDSSALV SSTSFNRAER DAEINLSLPG DAFDLIIRAK TALELACPNT  VSCSDILAVA TRDLVTMVGG PYYNVLLGRL DYRISKSSFV PGNLPLPSMS TSQMIAMFAA RGFSVQEMVA LSGAHTIGFS HCKEFSGLLY NGGSSGYNPR FAQALQKACA NSRKDPSVSV 
FNDIMTPNKF DNVYYQNLPK GLGLLASDHA LVKDNRTRPI VEMYARDQNK FFHDFANTMQ KLSVYGIKTG RRGEIRHRCD AIN* 

Retrieve as FASTA  
Remarks Complete sequence from genomic. Experimental evidency of cell wall localization.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCAAAC TACCACCAAC ACCCCCGCCG TCGCTTCTCT TCTTCTTCCT CTGCTTAGCA GCAGTCTCCG AATCCAGGCT TTCCTACAAC TACTACGACA AATCCTGCCC CAGATTCACC  CAAATCATCC AGGAAACCGT CACCAACAAA CAAATCACCA GCCCCACAAC CGCCGCCGGC ACCCTCCGCC TCTTCTTCCA TGCCTGCTTC GCCAATGGCT GCGACTCCTC TGCCCTTGTC  TCATCCACTT CCTTCAATCG AGCCGAGCGC GACGCCGAGA TCAACCTATC CCTCCCCGGC GACGCCTTCG ACCTTATCAT CCGCGCCAAG ACCGCCCTCG AGCTCGCCTG CCCAAACACA  GTCTCCTGCT CCGACATCCT CGCCGTCGCA ACACGAGATC TTGTCACAAT GGTCGGCGGC CCTTACTACA ACGTCCTCCT CGGCCGCCTC GACTACCGCA TCTCCAAGTC TTCCTTCGTC  CCCGGGAACC TCCCGCTGCC GTCGATGTCC ACCTCGCAGA TGATCGCCAT GTTCGCGGCC AGGGGATTCT CTGTCCAGGA GATGGTGGCG CTTAGCGGGG CTCACACCAT TGGGTTCTCT  CACTGTAAAG AGTTCAGCGG GCTGCTCTAC AACGGGGGCT CAAGCGGATA CAATCCGAGG TTTGCGCAAG CGCTTCAGAA GGCGTGCGCC AATTCAAGGA AGGACCCGTC GGTTTCGGTG  TTCAACGACA TAATGACTCC CAACAAATTC GACAATGTGT ACTACCAGAA CTTGCCCAAG GGGCTGGGTT TGCTGGCCTC GGACCACGCC CTGGTTAAAG ACAACAGGAC GCGGCCAATT  GTGGAGATGT ACGCTAGGGA TCAGAACAAG TTCTTCCATG ATTTCGCCAA TACGATGCAG AAGCTGAGCG TTTACGGGAT CAAGACTGGG AGGAGAGGCG AGATTAGGCA CAGGTGTGAT 
GCTATCAACT GA 

Retrieve as FASTA  
CDS
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCCAAAC TACCACCAAC ACCCCCGCCG TCGCTTCTCT TCTTCTTCCT CTGCTTAGCA GCAGTCTCCG AATCCAGGCT TTCCTACAAC TACTACGACA AATCCTGCCC CAGATTCACC  CAAATCATCC AGGAAACCGT CACCAACAAA CAAATCACCA GCCCCACAAC CGCCGCCGGC ACCCTCCGCC TCTTCTTCCA TGCCTGCTTC GCCAATGGCT GCGACTCCTC TGCCCTTGTC  TCATCCACTT CCTTCAATCG AGCCGAGCGC GACGCCGAGA TCAACCTATC CCTCCCCGGC GACGCCTTCG ACCTTATCAT CCGCGCCAAG ACCGCCCTCG AGCTCGCCTG CCCAAACACA  GTCTCCTGCT CCGACATCCT CGCCGTCGCA ACACGAGATC TTGTCACAAT GGTCGGCGGC CCTTACTACA ACGTCCTCCT CGGCCGCCTC GACTACCGCA TCTCCAAGTC TTCCTTCGTC  CCCGGGAACC TCCCGCTGCC GTCGATGTCC ACCTCGCAGA TGATCGCCAT GTTCGCGGCC AGGGGATTCT CTGTCCAGGA GATGGTGGCG CTTAGCGGGG CTCACACCAT TGGGTTCTCT  CACTGTAAAG AGTTCAGCGG GCTGCTCTAC AACGGGGGCT CAAGCGGATA CAATCCGAGG TTTGCGCAAG CGCTTCAGAA GGCGTGCGCC AATTCAAGGA AGGACCCGTC GGTTTCGGTG  TTCAACGACA TAATGACTCC CAACAAATTC GACAATGTGT ACTACCAGAA CTTGCCCAAG GGGCTGGGTT TGCTGGCCTC GGACCACGCC CTGGTTAAAG ACAACAGGAC GCGGCCAATT  GTGGAGATGT ACGCTAGGGA TCAGAACAAG TTCTTCCATG ATTTCGCCAA TACGATGCAG AAGCTGAGCG TTTACGGGAT CAAGACTGGG AGGAGAGGCG AGATTAGGCA CAGGTGTGAT 
GCTATCAACT GA 

Retrieve as FASTA