Entry information : LuPrx53(Lus10009091|PACid:23172415)
Entry ID 12164
Creation 2013-05-28 (Qiang Li)
Last sequence changes 2013-05-29 (Qiang Li)
Sequence status partial
Reviewer Not yet reviewed
Last annotation changes 2013-05-30 (Qiang LI)
Peroxidase information: LuPrx53(Lus10009091|PACid:23172415)
Name LuPrx53(Lus10009091|PACid:23172415)
Class Class III peroxidase     [Orthogroup: Prx012]*
Taxonomy Eukaryota Viridiplantae Streptophyta Linaceae Linum
Organism Linum usitatissimum (flax)    [TaxId: 4006 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value LuPrx53
start..stop
S start..stop
LuPrx133 251 2e-85 2..137 188..329
LePrx13 184 3e-59 2..137 180..319
NtPrx89-1A 184 3e-59 2..137 180..319
StPrx33 182 2e-58 2..137 180..319
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 215700..216113 414  
join(215700..216113)


exon

Literature and cross-references LuPrx53(Lus10009091|PACid:23172415)
DNA ref. Phytozome 12:   scaffold491 (215700..216113)
Protein sequence: LuPrx53(Lus10009091|PACid:23172415)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   137
PWM (Da):   %s   15198.45  
PI (pH):   %s   9.99
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MQGLNERDLV AIGFAQCWFF RNRIFNETSA SNINPKLASE RRSNCFANSG DTNLSSLNSS AASFDISYFK NLVAKKGLLH SDQALFAGGS TDSLVSTYSS NERSFWYDFA NSMVKMGNIK 
PLTGNRGQIR ANCRRVN* 

Retrieve as FASTA  
Remarks Partial sequence from genomic. Incorrect prediction. 5' end is missing.
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAAGGCC TCAACGAAAG GGACCTTGTA GCAATCGGGT TCGCGCAGTG CTGGTTCTTC AGGAACCGAA TCTTCAACGA GACATCCGCC AGCAACATCA ACCCTAAGTT GGCCAGCGAG  CGCCGTTCAA ACTGTTTCGC CAACTCCGGA GACACCAACC TCTCTTCCTT GAACAGCTCA GCAGCCAGCT TCGACATTTC GTACTTCAAG AACTTGGTCG CCAAGAAAGG GTTGCTTCAC  TCCGACCAAG CCCTCTTCGC TGGCGGGTCC ACCGACTCCC TGGTCAGCAC TTACAGCTCG AACGAAAGGA GTTTCTGGTA CGATTTCGCC AACTCAATGG TTAAGATGGG GAACATTAAG 
CCGTTGACTG GGAACCGTGG TCAGATTCGA GCCAACTGCA GGAGGGTCAA CTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGCAAGGCC TCAACGAAAG GGACCTTGTA GCAATCGGGT TCGCGCAGTG CTGGTTCTTC AGGAACCGAA TCTTCAACGA GACATCCGCC AGCAACATCA ACCCTAAGTT GGCCAGCGAG  CGCCGTTCAA ACTGTTTCGC CAACTCCGGA GACACCAACC TCTCTTCCTT GAACAGCTCA GCAGCCAGCT TCGACATTTC GTACTTCAAG AACTTGGTCG CCAAGAAAGG GTTGCTTCAC  TCCGACCAAG CCCTCTTCGC TGGCGGGTCC ACCGACTCCC TGGTCAGCAC TTACAGCTCG AACGAAAGGA GTTTCTGGTA CGATTTCGCC AACTCAATGG TTAAGATGGG GAACATTAAG 
CCGTTGACTG GGAACCGTGG TCAGATTCGA GCCAACTGCA GGAGGGTCAA CTAA 

Retrieve as FASTA