RedOxiBase: View Perox 12204

Entry information : LuRboh184(Lus10033423|PACid:23172085)

Entry ID	12204
Creation	2013-05-28 (Qiang Li)
Last sequence changes	2013-05-29 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang LI)

Peroxidase information: LuRboh184(Lus10033423|PACid:23172085)

Name

LuRboh184(Lus10033423|PACid:23172085)

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh002]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuRboh184 start..stop	S start..stop
LuRboh189	1650	0	14..847	114..955
PtRboh09	1355	0	14..847	102..926
VvRboh07	1314	0	14..847	92..917
AgluRboh05	1310	0	14..847	118..946

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1282408..1282762	355	N° 2	1282848..1283007	160	N° 3	1283475..1283523	49	N° 4	1283618..1283731	114
N° 5	1284484..1285293	810	N° 6	1285385..1285480	96	N° 7	1285568..1285683	116	N° 8	1285770..1285940	171
N° 9	1286037..1286196	160	N° 10	1286295..1286489	195	N° 11	1286591..1286719	129	N° 12	1286793..1286871	79
N° 13	1286949..1287058	110
join(1282408..1282762,1282848..1283007,1283475..1283523,1283618..1283731,1284484 ..1285293,1285385..1285480,1285568..1285683,1285770..1285940,1286037..1286196,12 86295..1286489,1286591..1286719,1286793..1286871,1286949..1287058)

Literature and cross-references LuRboh184(Lus10033423|PACid:23172085)

DNA ref.	Phytozome 12: scaffold488 (1282408..1287058)

Protein sequence: LuRboh184(Lus10033423|PACid:23172085)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	847
PWM (Da):	96191.21	Transmb domain:	o288-307i418-440o466-488i646-663o
PI (pH):	9.53

Sequence 889
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MEELICKHQAKEDLSATSRIRKKFGWLRSGSSRTTASEIDGGAITERDARRIRANLQRSKSSAERALKGLKFISKASSSTVAGGGGDAEQLWRRVESRFDSLSSRDGFLARDDFGECIGMVDSKEFAGSVFDALARRKGQRISRITKEELREFWLQITDHSFDARLQIFFDMADSNDDGRITREEVQELITLSASANKLSKLKEQAEEYAGLIMEELDPENLGYIELWQLETLLLRRDAYMNYSRPLSTASLGWSQNLSTRFQPRIMGRRLTSMLRSIIVENWQRGCILTLWLILMTLLFAWKFVNYRNRAAFQVMGYCLTTAKGAAETLKLNMALILLPVCRNTITWLRSTKARTVIPFDDNINFHKMIAVSIVIGVVLHAGNHLVCDFPRLTNASPEKFSLIASQFDGKKPTYRDLISSVEGVTGISMVVLMAIAFTLATSQFRRNLVKLPAPFNRLTGFNAFWYSHHLTGIVYILLFVHGTFLYLTDTWYDKNTWMYLSVPLLLYVVERTIRTCRSEHQSAKIIRVTVLPGDVFSLTMSKPQGFKYKSGQYIFLQCPSISSFEWHPFSITSAPGDEYLSVHVRIVGDWTQELKRVFTEVNDSPTVIGRAKFGQLGHMDHRGQPKLYVDGPYGAPAQDYKNYDVLLLVGLGIGATPFISILRDLLNNTRTTDYQTDSNTDTSRSDYSSNSCTSSNGTGGNTIKKKTVRTTNAHFYWVTREPGSFEWFKGVMDEVAEMDHKGQIEMHNYLTSVYEEGDARSTLITMVQALNHAKHGVDIVSGTRVRTHFARPNWREVFTKIASKHPFATIGVFYCGMPTLAKELKKLSQEMSHRTSTRFEFHKEYF*

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction. 5' end is missing.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAGGAGCTTATCTGCAAGCACCAGGCAAAGGAAGACTTATCTGCCACATCCAGGATAAGGAAGAAGTTCGGGTGGTTGAGATCGGGATCGTCGAGGACCACCGCCTCAGAGATCGAC
GGAGGGGCTATCACGGAGAGAGATGCAAGGAGAATTAGGGCCAACCTTCAGCGGTCAAAATCAAGCGCTGAGCGGGCACTGAAGGGGCTCAAGTTCATAAGCAAGGCCAGTAGTAGCACG
GTGGCCGGTGGGGGCGGCGACGCCGAGCAGCTGTGGCGGCGAGTCGAGTCTCGGTTTGACTCACTGTCGTCCAGAGACGGATTCCTCGCAAGGGATGATTTTGGCGAGTGCATAGGTGCG
TATTAATTGCTGAATTTGGATGATCGATATATCAGGTACAATTCCACCATTAATTAATAGTAGGATGAATTGATTGGCAGGGATGGTGGATTCGAAAGAGTTCGCGGGGAGTGTGTTCGA
CGCATTGGCGAGGAGGAAAGGGCAGAGGATAAGTAGAATTACAAAGGAAGAGCTTCGGGAGTTTTGGTTGCAGATTACAGACCACAGTTTCGATGCTCGCCTCCAAATTTTCTTCGACAT
GTGAGTAGTTGCTAACTTTTTACCACTGCGTACGGTACGTTTCAGTTTGAAAACCAGTGCCATTCTTTCTTCCGGCATCCACGATGGCCGTTATCTTCAAACAGATTCCTTTCCCTTTCT
TTTTTATTTATTTTACCTATGACCTAATTAACTTTAACCAATGTTTCTTACTCTTTCGAATAATATAAATGCCGTTAAATTGAGTAACAAAAACACCATTAAATCGTTATATACTTATAT
CTAGAACAGGATTCCGACGTGTATATTGAAATTAAGATTCTCGTAGAAATATATTAATCAGAAAAAAATAACAGCTGGACATAATACTACATAAACTATCTATTGATAATGATAGATTAG
TGGCCAACTCACAATATTTTAGTTCTTTTAGCTATAAATTCAAGGTTAAACCAATTACTCTGATAATCTGTTTCTAAGTTCTAACTACTAAAATGATATTTGAACAGGGCAGACAGCAAT
GATGATGGAAGAATCACAAGGGAAGAGGTGCAGGAGGTAATTATAAGCTGTCCATTAATTAATTATACTTCTTAATGTGTAACAAATTTAGCAAGGTCTCTAAATATGTTGAATATGGAA
AATCACGCAGTTGATAACACTGAGTGCTTCAGCTAATAAACTCTCCAAATTGAAAGAACAAGCTGAAGAATATGCAGGATTGATAATGGAGGAGCTTGATCCTGAAAATCTTGGATACAT
TGAGGTAAATAAAATGATCTTATTTGTTATTTAAGATCCAAAAAATATTCACTGATCACCAGAGCATGGAATATTTATAGCGTGGAATTCAAGTTATGTTTTTGCCTCTAATTTATAAGA
TGATTAATTAATTGATTCCTATCCTGTATATAGTGGGTCTCCACCCACCACCAACTCATAATTAGGTTACTTTTTAGTTTACGTGATGCATTATTATTGACTTTTTGGACCTTTTTCTTT
TATAACTATTTTGAGTTTCATTAATCTCATACATTTGTTACTCACACCTCATTTTTAATTGTTCTCTAATAGTTAGTTTAATGTTGAAATCAGATCATCTTGCATCTGCCACCGTAATTG
AAACTTGTTATCAGTAAAAATCTTTATCGTCAATGTGATTTATTTACTGTCCCTGTGAATATATTACGTTTTCCTCTGTCTTGCTTTTAGTTTAGGCCTGGCACTTTGGTTGGTTATTCC
GTTTAACCGAATTCGTGTAGCCCAAAACCGAATTTGTATGTTTCAATCGAAACAGAAATCGAAAATTTGGCAATCAATTTGAATTCAGAAAATTCGGTGATTTCAGTTAAATACGAAAGC
GAAATCGGCCGCAGTTTTTTACAATATACATGGAAACATGGAATAATGAATATCAGAGAGAAGTTTTTTTTATTAATATTTACATTGATCTGAACAAATGAGGAGTGGGTTTTGATTTAT
TTACGTTTGTCTTCTTCTTCTCCTGGTAATGTATAGCTATGGCAGTTAGAAACACTACTTCTTCGAAGGGACGCATACATGAACTACAGCAGGCCACTAAGCACTGCGAGCTTAGGGTGG
AGTCAGAATTTGAGCACTAGATTTCAACCCCGAATCATGGGTCGCAGGCTTACTTCGATGCTAAGGAGCATCATTGTCGAGAACTGGCAACGTGGTTGTATATTGACTCTATGGCTAATC
CTAATGACTCTGCTCTTCGCATGGAAGTTCGTCAATTATAGAAACAGAGCTGCATTTCAAGTAATGGGCTACTGCCTCACAACTGCCAAAGGCGCTGCTGAGACTCTTAAGCTCAACATG
GCTCTAATCCTCTTGCCCGTCTGTCGAAACACCATTACCTGGCTTCGATCCACCAAAGCTAGGACCGTCATTCCTTTTGACGACAACATCAACTTCCACAAGATGATTGCAGTGTCAATA
GTAATCGGGGTTGTTCTTCACGCGGGGAACCATTTGGTCTGTGATTTCCCTCGTTTGACGAATGCCTCCCCGGAAAAGTTTTCCTTGATAGCATCTCAGTTCGACGGCAAGAAACCCACC
TACAGAGATCTTATAAGCAGCGTTGAAGGCGTGACAGGAATCTCCATGGTGGTGCTAATGGCCATTGCATTCACTCTCGCAACTAGTCAGTTCAGGAGGAATTTAGTGAAGTTGCCGGCG
CCTTTCAACAGATTGACTGGGTTCAACGCCTTCTGGTACTCTCATCACCTTACCGGAATAGTCTACATCTTGCTCTTTGTACATGGGACTTTCCTCTACCTCACTGACACGTGGTATGAC
AAAAATGTAAGCCTATATACAATACAACTGGAACCTGAATTTGATTGCACGTAATCTTATTTGGTATCTTAAAGTCGTCTGCTTGTTGATTTTGCAGACATGGATGTATCTTTCTGTTCC
ACTACTACTCTACGTAGTAGAGAGGACCATTCGAACGTGTCGATCAGAGCATCAGTCTGCCAAGATTATAAGGGTAATCTGATTGATTATCAAGTTGCAGAGGGATGTTCCCTTTTCCTC
ATCATTTGATTCTCAATCGACTGTTTTTCTGCCCGGGCAGGTAACGGTTTTGCCAGGAGATGTGTTCAGCCTAACAATGTCGAAGCCACAAGGGTTTAAGTACAAGAGTGGCCAGTACAT
ATTTCTTCAATGTCCATCGATTTCTTCCTTCGAGTGGTGAGTGGCTGAGTGTAAGGAAAAAGCTCGAATACTTGATAGGGTCACGACTAATCCATAATACAAGTAATTTCCTTCTTGTGC
AGGCATCCATTCTCGATAACCTCAGCTCCAGGAGACGAATACCTTAGTGTCCATGTCCGGATTGTGGGTGACTGGACACAAGAATTGAAGCGAGTTTTCACTGAGGTTAACGACTCACCA
ACTGTTATTGGCCGAGCTAAATTCGGTCAACTCGGCCATATGGATCATAGAGGGTAATCACCAACTCGGAATATAAAGATAGCATACCTGTTTACATACTGAAGGCTTTCAAGCAATCTA
AAACTAAGGACTCGAAAAAAATGTTGCAGGCAACCAAAACTATATGTTGACGGTCCATATGGGGCTCCTGCACAAGACTATAAGAACTATGATGTACTGCTCCTTGTAGGGTTGGGTATT
GGGGCTACCCCTTTCATCAGCATTCTCAGAGATCTGTTAAACAACACCAGAACAACAGACTATCAGACGGTATGTTCGCCCCACACAATGCATAATTAAATTAATGGATGAGATATTAAG
CTTTTTCTACAGTTTCCGTTTCAATTTTGTTTATGAGAATCGTGCAGGACTCAAATACAGATACAAGCAGATCAGATTACAGTTCAAACAGTTGCACATCTTCGAATGGGACAGGAGGGA
ACACTATTAAGAAGAAAACCGTGAGAACCACCAACGCTCACTTCTACTGGGTTACAAGAGAACCAGGGTCATTTGAATGGTTTAAAGGAGTCATGGACGAAGTTGCAGAAATGGACCACA
AAGTAAATTCACAAGCACATCAAATCTCCATCTCTGAATCTTCATTGTCAATATAAAAATATGGTTTCTGACATGGCTCATTCTTTTGTAAATAAATGGAAAGGGCCAAATTGAGATGCA
CAACTACTTGACAAGTGTATACGAAGAAGGTGATGCAAGGTCAACTTTGATTACCATGGTTCAAGCGCTTAACCACGCCAAACATGGAGTTGACATCGTTTCTGGCACTAGAGTATGAAA
CATATCTTATCTCGTTGTCACATCTCAGATAATAGAAAATTGGCATTTACAGAACTGTTTTACAGGTAAGAACACACTTCGCCAGACCAAATTGGAGAGAAGTTTTCACCAAAATAGCTT
CAAAGCATCCGTTCGCAACAATAGGTAAACAAACAGAAGCTGTCTGAATCTAAGTATACCTTGCAATCTGAGACGTAAACTTATACTGGCCAAAACTGCAGGGGTGTTCTATTGCGGGAT
GCCTACGTTAGCAAAGGAGCTAAAGAAGCTAAGTCAAGAGATGAGTCATAGGACGTCTACACGGTTCGAATTTCACAAGGAATACTTCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA