RedOxiBase: View Perox 12225

Entry information : LuRboh216

Entry ID	12225
Creation	2013-05-29 (Qiang LI)
Last sequence changes	2013-05-30 (Qiang Li)
Sequence status	partial
Reviewer	Not yet reviewed
Last annotation changes	2013-05-30 (Qiang Li)

Peroxidase information: LuRboh216

Name

LuRboh216

Class

Respiratory burst oxidase homolog [Orthogroup: Rboh003]*

Taxonomy

Eukaryota Viridiplantae Streptophyta Linaceae Linum

Organism

Linum usitatissimum (flax) [TaxId: 4006 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	LuRboh216 start..stop	S start..stop
LuRboh96	1422	0	17..781	35..845
ToriRboh11	946	0	48..781	86..799
DdruRboh09	932	0	26..781	62..809
PandeRboh08	930	0	48..781	91..804

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1409242..1409536	295	N° 2	1409595..1409805	211	N° 3	1409906..1410068	163	N° 4	1410538..1410843	306
N° 5	1411248..1411634	387	N° 6	1411728..1411823	96	N° 7	1411916..1412134	219	N° 8	1412212..1412373	162
N° 9	1412450..1412587	138	N° 10	1413242..1413367	126	N° 11	1413462..1413570	109	N° 12	1413605..1413738	134
join(1409242..1409536,1409595..1409805,1409906..1410068,1410538..1410843,1411248 ..1411634,1411728..1411823,1411916..1412134,1412212..1412373,1412450..1412587,14 13242..1413367,1413462..1413570,1413605..1413738)

Literature and cross-references LuRboh216

DNA ref.	Phytozome 12: scaffold9 (1409242..1413738)

Protein sequence: LuRboh216

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	781
PWM (Da):	88705.89	Transmb domain:	o243-262i326-345o380-402i423-445o
PI (pH):	8.93

Sequence 1068
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

SSLSSSNSSSSSSSSSMQMQHHYCSHLLDNGPLEGGHPPPNAIRFVEIGWEEVENRFNRLVIVRGESQPSVKGADFGYCVGIKDDPFMFVAGSDMINLWLLQCPEFAGQLLRALRGRRSSSRRRRRIKTDEEDSNYGSGITIRELYSHWHRLTSPSFSFQSSSNLLFDICDRDMDGKINQADITQGILLSASTNRLCVTHEEAQEHAASIMEVLDSTRCGYIQEVSKSKAEIVFRAYWRRSWILLMWLIICFSLFTWKFIQYKHRMAFEVMGYCLSTAKGAAETLKFNMALILLPICRNTITWIRRSTRINSVIPFNDNINFHKIVGGGIVIGVILHGGTHLACDFPRISGSDKATFRQTIAADFAYHQPSYVEILATTEVATGIAMVLLMAVAFTLATSWPRRQSALLPKSVRQVTGYNTFWYSHHLLILVYALLIVHSMFLFLTNNLFEKTTWMYIVFPVILYGGERVWRAIRSDSYNVQVLEASMFHGKVLHLKLQKPQGFKYKSGMYMFIQCPQISKLQWHPFSLTSGPKDDHLSVHMRALGDWSYEVYGLFQEAILSGRKEFPKIYIDGGYGAPSQDHVKYDVVLMIGLGIGATPFISILKDIRSQQDGSEETRRGKGPLRAYFYWVTREQSSFDWFRDSLRNISTSNQNMVSVIEVNNFLTTAHEEGDARSALISAAQALYRAKTGLDMLSRYQEARTHFGRPNWFSIFSTLAIRHEHERIGKNINRKEPIAMFCVGAGVFYCGPPALGKELEELCTNFSTKTPTRFVFHKEHY

Retrieve as FASTA

Remarks

Partial sequence from genomic. Incorrect prediction. 5' end is missing. PS is missing.

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

TCGTCTTTGTCTTCTTCAAATTCTTCTTCCTCTTCCTCCTCTAGTTCAATGCAGATGCAGCATCACTATTGCAGTCACTTGCTGGATAATGGTCCTTTAGAAGGAGGACATCCACCTCCC
AATGCAATAAGGTTCGTAGAAATTGGTTGGGAGGAGGTGGAGAACCGGTTCAACCGGCTGGTTATCGTCAGGGGAGAGTCTCAACCATCAGTCAAAGGGGCAGATTTTGGCTACTGTGTA
GGTATAAAGGATGACCCTTTTATGTTCGTTGCAGGTTCTGACATGATCAATCTGTGTTCTGTGGTTTTTTTGGGTGAAAGCTCTAGTTGTGATTTTTGGTTCTTATGCTGCAGGGCTGCT
ACAGTGTCCTGAATTTGCAGGTCAGCTTTTGAGGGCATTAAGAGGGAGAAGAAGCAGCAGCAGAAGAAGAAGAAGAATAAAAACAGATGAAGAAGATTCCAACTATGGTAGTGGAATCAC
AATAAGAGAACTTTATAGCCATTGGCATCGGCTGACTTCTCCTAGTTTCAGTTTCCAGTCAAGCTCCAACCTTTTATTTGACATGTAATGCTCAACTTACCCTTGAAGTTATGCTCATCA
TTTCTGGAGATTATAAACAGTTTGTAACTTAACTGAAGCTTACACATTGATGTTACATTCTCAGATGTGACAGAGATATGGATGGAAAGATTAATCAGGCGGACATTACGCAAGGAATAT
TGCTAAGTGCTTCAACGAATAGACTGTGTGTAACACATGAGGAAGCACAAGAACATGCTGCTTCAATCATGGAGGTTCTGGATTCAACAAGATGTGGCTACATTGAGGTACACCAACATC
TGATAAAATCTTCCCTTCAAGTATTGTCATGAACCATTAAGTCCCAATAACTCGAGTTGTTGGGAGAGAGTTCATATATATTCATAACACGCCCTTTCAAACAAAAGCTCTTGAGATTTG
CACAACTTTAGTAAGCCATGTGCACGGATTGGCGCTAGCGGGATTCTATCACTGATCTATCGGTCTTTTAAGGCTCCAATACCATGCAATGAACCGTTTAGTTCCAATAACTCGAGTTAT
TAGGGAGGGCTCATATTGATTTTTATGTTATTCATTAGTAGTATAGTAGTATACAAATTGTAAAGAGTTTTAACATTATATCTGGATTTAATTTCAACCATATAGTTAGTTGAAACATTG
CAGCCTAATGAACTAGCTGCACTACTCAGAGCAACCTTGCCAGGAAGCAGCAACAGTGGAAAGCTTGCTGTCAATGGTGACAATGCAATAAGCCACCAAGAAGTGTCAAAATCCAAGGCG
GAAATCGTGTTTAGGGCTTACTGGAGGAGATCATGGATATTGCTGATGTGGTTGATCATCTGCTTCTCACTATTCACATGGAAGTTCATTCAGTACAAGCACAGAATGGCATTTGAAGTA
ATGGGGTATTGCCTTTCCACTGCTAAAGGTGCAGCTGAGACACTCAAATTCAACATGGCTTTGATCCTCCTCCCCATTTGTCGAAACACCATCACTTGGATTCGGAGAAGCACAAGGATC
AACTCTGTTATTCCATTCAATGACAACATCAACTTCCACAAGGTAAGCATCCAAGGGCTCGTTTGGATGAGTTATTTTGCATGTGTGGTGGTACTTTGGAGCAAAATGATGCATTATTAT
TTGAGAATGTGAGATTTATGAGATGCAAAGGGGTTATGATGCAGGAATTATCTTGTTTAGCTAATGAGTCAATTCAATGTGGTATTTGCTAAACGTAAAGGCCAAAGTACTCGAAATACC
GGGGTATTTTAAATACCTCCACCCCCGACTATTTAAAATACTGCGGCCGCCATAGGTTTTTTTATTGGATGCTAAATGAATTATTTTGATCCAAATAACTCATCCAAACAACCTGTAAAG
GTGTCAAACCCGCGAGTTAGGTTTAGATTTAAGGTTCGTTACCCTGTGAGTGACTCAATAATAACTTGTTGGTGTGTGTTCATCAGATAGTTGGTGGAGGGATAGTGATTGGAGTAATAC
TACATGGTGGAACACATCTTGCTTGTGACTTCCCAAGAATAAGTGGTTCAGACAAGGCAACTTTCAGGCAAACCATAGCAGCCGACTTTGCTTATCACCAACCTTCATATGTTGAGATAT
TGGCCACCACAGAGGTTGCAACTGGGATTGCAATGGTATTGCTAATGGCGGTTGCATTCACTCTGGCGACAAGCTGGCCTCGTCGCCAATCAGCTTTGCTTCCAAAGTCTGTCAGACAAG
TAACTGGTTACAACACATTTTGGTACTCTCACCATTTGCTCATACTTGTCTATGCCCTCCTCATTGTTCACTCCATGTTCCTCTTCCTTACCAACAATCTCTTTGAGAAGACTGTGAGTT
CTTTGTTTCTCTTTTCCTTCTTTGTGCCTTAATGTGTAAAGAGGGTAGTGTTAATAACCTGCAAAAAGGTTTGATCTTTGTTGCAGACATGGATGTACATTGTCTTCCCAGTGATTCTAT
ACGGTGGCGAACGCGTATGGAGAGCCATTAGATCAGATTCTTACAATGTACAAGTTCTGGAAGTATGTACATAAATCTGAATGGTGGATGATAGCCTGTGAGATGAGATTCCCCAAAGGT
TTGGACTGATGTTTTTAATGCCTGTGGAATGCAGGCAAGCATGTTCCATGGAAAGGTTTTGCATCTGAAGCTGCAGAAACCTCAAGGTTTCAAGTACAAGAGTGGGATGTACATGTTCAT
ACAGTGTCCTCAGATTTCTAAGCTTCAGTGGCACCCATTTTCATTAACTTCAGGACCTAAAGATGATCACTTGAGTGTCCACATGAGAGCTCTTGGTGATTGGAGTTATGAAGTATATGG
TCTCTTCCAAGAGGTGATAAATTGAACAAAGTTAACAAAACGGCAGAATTAAAACAGTAAGCTCAACCTGGTGTTTTTCTCCATTGTTAGGCAATATTATCTGGAAGGAAGGAGTTTCCA
AAGATATACATAGATGGAGGATATGGAGCTCCATCTCAAGACCATGTTAAGTATGATGTTGTCCTGATGATTGGTCTTGGCATTGGAGCTACACCCTTCATTAGTATCCTCAAAGACATA
AGATCTCAGCAGGTAGACATAAGATTCTCAGCCTTTATCTTACTGTATAGATTTTGAGCTTTCTTGAACACTGAACCATGAAAGGCAGGATGGCAGTGAAGAAACCAGAAGGGGAAAGGG
TCCTTTAAGAGCCTACTTCTACTGGGTGACAAGGGAGCAAAGTTCGTTTGATTGGTTCAGAGACAGTTTGAGGAACATATCCACATCAAATCAAAACATGGTTAGTGAACTGATTGCAAA
TTAAGAGCAACAATCCCACACGCCATTTCTACTCATAGCTAATGCTGTTGACGAACCCAAGCTGCTCGCAAGTGGTTCGTGTTCGGTTATTGAAAAGGTTCGATCAAAACTCTGCTCGAT
TTTAAACGAGTTGGCTTGTTAGCAAGCTCGGCTCGTCAGCTCGATGAGCTTGGCTCGCGAGCCAGTTCGTTTGAGGCTCGATTACTAACTCGACTAAGGCTAGAGAGTTGGCTCGAGTTT
GGCTCAATTGAGACTCGTTTGTTAGCTCAATTAGTGTAGCTAGTGAGTTGGTTTTAGAGCTTTTAATGGTTCGAATTTGTGATTTTATCTAAAAAACAAAAATATGATTATCAATAATGT
TGTCTTAATGACTAGTCATTTAATTAGACTTTGAGAGTACACTATTTTAGAATAGTTTAAATTTTGTATAAACTTATCCAAGTTGAGCTTGAAATTTAACTCGGTTTGTAAAAACTTGCA
AACAAGCCGAGTTGAACTCGTTAAGGCCTCTAGACGAGCCGAGCTTGGACTAATAATTAGTTTTTCGAGCCGGGCAAAGCTCGCTCGGCTCGTCAGAAGCCAGCCCTACTCATAGCTGAT
AGATAACAAACTGAGTTTCCTAAACATGCAGCAGAAGGCTGTGATTGAGGTGAACAACTTCTTGACAACAGCACATGAAGAAGGAGATGCAAGGTCAGCTCTGATCTCTGCAGCACAAGC
ACTGTATCGTGCCAAGACCGGCCTCGACATGTTGTCCCGGTATCAGGTAAAACACTAGCTAGTGAGAGTTCAGATTGGTTCTTATATTATTCATTAACATCGAGACCTGACAGTCTTGAA
CCCGAAATGGGGAGTTTCAGGAGGCTAGGACGCATTTTGGTCGACCTAACTGGTTCAGCATCTTCTCAACGCTGGCTATAAGACATGAACACGAGAGGATTGGTAAGAACATTAACAGAA
AGGAACCAAGTTTCAATGCAGTGCACCGACTGTTCTTCATATATTGCCATGTTTTGCGTGGGTGCAGGAGTGTTCTACTGTGGACCGCCAGCGCTAGGAAAAGAATTAGAGGAGCTATGT
ACCAATTTCTCAACCAAAACACCCACTCGATTTGTTTTCCACAAGGAACATTACTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA