Entry information : SverGPx01
Entry ID 12417
Creation 2013-06-04 (Christophe Dunand)
Last sequence changes 2013-06-04 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2013-08-20 (Catherine Mathe (Scipio))
Peroxidase information: SverGPx01
Name SverGPx01
Class Fungi-Bacteria glutathione peroxidase    [Orthogroup: Gpx3001]
Taxonomy Eukaryota Fungi Basidiomycota Agaricomycetes Sebacinaceae Sebacina
Organism Sebacina vermifera    [TaxId: 109899 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SverGPx01
start..stop
S start..stop
PindGPx01 284 1.97e-99 1..160 1..160
DsGPx01 270 7.24e-93 3..160 81..237
PoGPx01_PC15 269 1.24e-92 1..160 82..240
PstrGPx01 270 1.46e-92 3..160 98..254
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12417' 'complement(join(182586..182795,182848..182893,182968..183186,183250..183335,183394..183417))' Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 183394..183417 22 N° 2 183250..183335 84 N° 3 182968..183186 217 N° 4 182848..182893 44
N° 5 182586..182795 208  
complement(join(182586..182795,182848..182893,182968..183186,183250..183335,1833 94..183417))


exon

Literature and cross-references SverGPx01
DNA ref. JGI genome:   scaffold_22 (183417..182586)
Cluster/Prediction ref. JGI gene:   329973
Protein sequence: SverGPx01
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   195 (298)
PWM (Da):   %s   20974.61 (31899.9)  
PI (pH):   %s   5.81 (7.73) Peptide Signal:   %s   cut: 26 range:26-323
Sequence
Send to BLAST
Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MTGFYDLKMSLPGGKGVYTFDQLKGKVVLIVNVASQCGFTPQYKGLEGLNKKYADQGLVVLGFPSNQFGGQEPGTDEEIASFCELNHGVTFPLMKKSDVNGNDTNEVYQWLKKEKAGLLG
MTRIKWNFEKFLIDQNGKVVHRWASTTTPATIDAEVAKLLANNPAPAPTSTTTAEPPVPEATAASGSEAKDTAAL*

Retrieve as FASTA  
Remarks Complete sequence from genomic (4 introns).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACCGGATTCTATGATCTCAAGGTAAAGTCCACCTCACTCGACGTTCGGCGCGGCTTTGTAAAACTCACCGGCCCATTAGATATGTCCTTGCCTGGCGGCAAAGGCGTATACACATTT
GACCAACTGAAAGGAAAGGTCGTGCTTATCGTCAACGTTGCCTCGCAATG
GTAAGCTCATGGTTATTTTTGGCACATTCTTTTCTCCTTCTAATTTCTTTGCGTCTTCTCTAGTGTGGAT
TCACACCACAGTATAAAGGTCTCGAGGGACTGAACAAGAAATACGCCGACCAAGGGTTGGTCGTTCTTGGATTTCCCTCAAACCAGTTTGGTGGACAAGAACCCGGAACAGACGAGGAGA
TTGCGAGCTTTTGCGAGTTGAACCACGGCGTCACGTTTCCCCTTATGAAGAAGAGTGATGTGAATGGGAATGACACAAACGAGGTGTACCAGTG
GTAAGTGGGCGCCCGTGTGGCGTGGC
CTGGTCTATATGCTTGACTTTCATACTTGTACTGATGACACTTTATAGGTGTTGAAGAAGGAAAAGGCAGGGCTTTTGGGAATGACACGCATCAAGGCAGGTGTCCATAGCCAGGCCTCC
ACTTTCTTTCTATTAACACATTTTACAGTGTGGAACTTTGAAAAGTTTTTGATCGACCAGAACGGCAAGGTTGTGCATAGATGGGCATCGACCACGACGCCCGCCACTATTGACGCCGAG
GTGGCAAAGTTGCTCGCCAATAACCCCGCGCCAGCTCCTACGAGCACAACCACTGCAGAACCACCTGTTCCAGAGGCTACTGCTGCCTCAGGGTCGGAAGCGAAGGATACTGCAGCGCTT

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGACCGGATTCTATGATCTCAAGATGTCCTTGCCTGGCGGCAAAGGCGTATACACATTTGACCAACTGAAAGGAAAGGTCGTGCTTATCGTCAACGTTGCCTCGCAATGTGGATTCACA
CCACAGTATAAAGGTCTCGAGGGACTGAACAAGAAATACGCCGACCAAGGGTTGGTCGTTCTTGGATTTCCCTCAAACCAGTTTGGTGGACAAGAACCCGGAACAGACGAGGAGATTGCG
AGCTTTTGCGAGTTGAACCACGGCGTCACGTTTCCCCTTATGAAGAAGAGTGATGTGAATGGGAATGACACAAACGAGGTGTACCAGTG
GTTGAAGAAGGAAAAGGCAGGGCTTTTGGGA
ATGACACGCATCAAG
TGGAACTTTGAAAAGTTTTTGATCGACCAGAACGGCAAGGTTGTGCATAGATGGGCATCGACCACGACGCCCGCCACTATTGACGCCGAGGTGGCAAAGTTGCTC
GCCAATAACCCCGCGCCAGCTCCTACGAGCACAACCACTGCAGAACCACCTGTTCCAGAGGCTACTGCTGCCTCAGGGTCGGAAGCGAAGGATACTGCAGCGCTT

Retrieve as FASTA