The peroxidases and oxidases database
Entry information : GbAPx01 (SGTW-2003518 / SGTW-2003517 / gba_locus_1093_iso_4_len_562_ver_2)
Entry ID 12510
Creation 2013-10-31 (Christophe Dunand)
Last sequence changes 2013-10-31 (Christophe Dunand)
Sequence status complete
Reviewer Achraf Jemmat
Last annotation changes 2015-11-10 (Achraf Jemmat)
Peroxidase information: GbAPx01 (SGTW-2003518 / SGTW-2003517 / gba_locus_1093_iso_4_len_562_ver_2)
Name (synonym) GbAPx01 (SGTW-2003518 / SGTW-2003517 / gba_locus_1093_iso_4_len_562_ver_2)
Class Ascorbate peroxidase    [Orthogroup: APx001]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation Cytosolic
Tissue types Leaves
Microsporophylls
Ovule
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbAPx01
start..stop		 S start..stop
CruAPx01 465 6e-169 1..251 1..249
CmichAPx11 465 6e-169 1..251 1..249
PpAPx01 453 3e-164 1..251 1..249
PmeAPx03 452 8e-164 1..251 1..249
Literature and cross-references GbAPx01 (SGTW-2003518 / SGTW-2003517 / gba_locus_1093_iso_4_len_562_ver_2)
mRNA ref. GenBank:   FJ555021.1
EST ref. GenBank:   EX934576.1 [5' end]   EX939835.1 [3' end]
Protein sequence: GbAPx01 (SGTW-2003518 / SGTW-2003517 / gba_locus_1093_iso_4_len_562_ver_2)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   251 (197)
PWM (Da):   %s   27442.95 (21100.4)  
PI (pH):   %s   6.35 (4.69) Peptide Signal:   %s   cut: 26 range:26-222
Sequence 0
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Send to Peroxiscan
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MGKSYPTVSE EYKAAIEKCR RKLRALIADK NCAPIMVRLA WHGAGTYDVK TNTGGPFGTI RYSAELAHGA NNGLIIAVRL LEPIKAQFPI ISYADLYQLA GVVAVEITGG PDISFHPGRK  DKLEHEAPEE GRLPDATKGS DHLRDVFGHM GLSDKDIVAL SGAHTLGRCH KERSGFEGPW TANPLIFDNS YFTELVTGEK EGLLQLPSDK ALLIDPKFAV YVHKYAQDED AFFADYAESH 
QKLSELGFAE A 

Retrieve as FASTA  
Remarks Complete sequence from 16 ESTs and RNA seq (several partial predictions) .
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGCAAGT CGTACCCTAC TGTTAGCGAG GAATACAAGG CCGCCATTGA AAAATGCAGA AGGAAGCTCC GTGCTCTTAT TGCAGATAAG AACTGTGCTC CGATCATGGT TCGCCTCGCA  TGGCATGGCG CAGGGACTTA TGATGTGAAG ACAAATACCG GAGGGCCTTT TGGAACCATC AGATACTCTG CCGAGCTCGC CCATGGTGCT AACAATGGTC TGATTATTGC CGTCAGGCTC  CTGGAACCCA TCAAGGCACA GTTTCCGATA ATCTCTTATG CCGATTTGTA TCAGTTGGCT GGTGTGGTTG CTGTTGAGAT TACCGGAGGA CCAGATATTT CTTTCCACCC TGGAAGAAAG  GACAAGCTTG AACACGAGGC CCCAGAGGAG GGACGTTTGC CTGATGCTAC CAAAGGTTCT GATCATTTGA GAGATGTTTT TGGTCATATG GGCTTGTCTG ATAAGGATAT TGTGGCGTTA  TCTGGTGCTC ACACTTTGGG AAGATGCCAC AAGGAGCGGT CAGGGTTTGA AGGTCCATGG ACTGCCAACC CTCTCATCTT TGACAACTCC TACTTCACGG AGCTTGTGAC AGGAGAGAAA  GAAGGTTTGC TTCAATTGCC TTCTGACAAG GCTTTGCTGA TTGATCCCAA GTTTGCAGTT TATGTCCATA AGTATGCACA GGATGAAGAT GCTTTCTTTG CTGACTACGC AGAATCTCAC 
CAGAAACTTT CTGAACTTGG GTTCGCCGAG GCATAG 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGTTCGAATC TGATCAAAGA ATTGAAGCCA TGGGCAAGTC GTACCCTACT GTTAGCGAGG AATACAAGGC CGCCATTGAA AAATGCAGAA GGAAGCTCCG TGCTCTTATT GCAGATAAGA  ACTGTGCTCC GATCATGGTT CGCCTCGCAT GGCATGGCGC AGGGACTTAT GATGTGAAGA CAAATACCGG AGGGCCTTTT GGAACCATCA GATACTCTGC CGAGCTCGCC CATGGTGCTA  ACAATGGTCT GATTATTGCC GTCAGGCTCC TGGAACCCAT CAAGGCACAG TTTCCGATAA TCTCTTATGC CGATTTGTAT CAGTTGGCTG GTGTGGTTGC TGTTGAGATT ACCGGAGGAC  CAGATATTTC TTTCCACCCT GGAAGAAAGG ACAAGCTTGA ACACGAGGCC CCAGAGGAGG GACGTTTGCC TGATGCTACC AAAGGTTCTG ATCATTTGAG AGATGTTTTT GGTCATATGG  GCTTGTCTGA TAAGGATATT GTGGCGTTAT CTGGTGCTCA CACTTTGGGA AGATGCCACA AGGAGCGGTC AGGGTTTGAA GGTCCATGGA CTGCCAACCC TCTCATCTTT GACAACTCCT  ACTTCACGGA GCTTGTGACA GGAGAGAAAG AAGGTTTGCT TCAATTGCCT TCTGACAAGG CTTTGCTGAT TGATCCCAAG TTTGCAGTTT ATGTCCATAA GTATGCACAG GATGAAGATG  CTTTCTTTGC TGACTACGCA GAATCTCACC AGAAACTTTC TGAACTTGGG TTCGCCGAGG CATAGACACA TTAATGAAGC AATGATTATC ATCCGTGGGT TTTTGAGCAA TTGTTGCAGA  TGGATAGATA ATTAACTGTT GGGAGGGCTA TTTTTTGTGG AACCAAGAAT GGTCTGATTT CTTTGATATC AAATGGCTTA AAAAAATATA GCCTAATCTT TTGAGGCCTT TATGGGCGAA 
TGCTGCTCTC ATTTAGCTGA GCTAAACTCG TATTGTTAAA TAAAACTTTT GTTTTTACTG ATCATATCAT TTATGGCGGT TTTTAATTAA AAAAAAAAAA AAAAAAAAAA AAAAAAA 

Retrieve as FASTA