Entry information : CrubPrx17-1C (Carubv10006362m)
Entry ID 12903
Creation 2014-04-10 (Christophe Dunand)
Last sequence changes 2014-04-10 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2014-04-11 (Christophe Dunand)
Peroxidase information: CrubPrx17-1C (Carubv10006362m)
Name (synonym) CrubPrx17-1C (Carubv10006362m)
Class Class III peroxidase    [Orthogroup: Prx020]
Taxonomy Eukaryota Viridiplantae Streptophyta Brassicaceae Capsella
Organism Capsella rubella    [TaxId: 81985 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CrubPrx17-1C
start..stop
S start..stop
CagraPrx51 669 0 1..324 1..324
BstrPrx70 632 0 1..322 1..321
AtPrx17 522 0 1..322 1..321
AlyPrx17 516 0 1..322 1..321
Literature and cross-references CrubPrx17-1C (Carubv10006362m)
DNA ref. Phytozome 12:   scaffold_7 (705246..706389)
Protein sequence: CrubPrx17-1C (Carubv10006362m)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   325 (304)
PWM (Da):   %s   35715.79 (33363.5)  
PI (pH):   %s   5.51 (5.51) Peptide Signal:   %s   cut: 21 range:21-324
Sequence
Send to BLAST
Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MNLVPNLFMC LLLLFTVVAG ETLQPAFYGK TCPKAESIVR EEMRKAMLKE ARSVASIMRL QFHDCFVNGC DGSVLLDDTP TLLGEKLSLA NIGSLRSFDV VDNIKEALEK ACPATVSCAD  IIIMASRDAV ALTGGPDWEV KLGRKDSLTA SQKDSDDIMP SPNDSTATSL IDLFQRFNLS TKDMVALSGS HSIGEARCFS VTPRLYNYSG SGKSDPAFEP LYREKLTKLC PMGGDENVTS 
GMDATAKVFD NQYFKNLVSR KGFLHSDQTL FTSPETREYV KLFSENETEF FKAFAEGMVK MGDLQSTKPG EVRLNCRAVN RKSY* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (introns 1 and 2).
Promoter
Send to BLAST
Send to cis Analysis
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TAAACCAAAA TGACTGGAGA TGATAGAGTA TAACGCACCA TTCCATTAGG TAGAGATCCT GGTTCTGATG ATTCATGTAT TATTTCAAGC AGCTGAAATG TCTTGGAACC AGGTGCAGCA  CACACTGTTC AGACAAAAAG AAGAGAAGAA GAAAAAGACA AGTGAACCGT TACTCCTCAA GTCCATAGCT TCTCAAAAAA TGTCGAATAA AAATCACTCA CTGTCGAGTA CAAAATGATC  TGGATGTACA TCAAGGAAGA GAGGTGGAAC CTGCATGATC ATAATGTCAG CCACGAAAAC TACAAAATGT ACCCGATTAA AGAATGAATG TAACACTACC ATACCATGCT AACTGATTCT  TGCCTGGTCA TGTTCCCAAC TTCAGTTTCT AACTTTAGGA ACTCATGAAA CCTGAATAAG ACCTCAATAA ATAAGTAGAA GAGAGCATGA ACCCAAACAA GTAAGGGAAT GGAATCGAAT  ACATGTTTTG AAGCAACTGG CATGAGAAAC AAATTTGTAC CTCTCAAGTG TCTGGTTTTT CCTAATCTCC TTGCGCGAAA AATTAGAATG CCAAGCAAGA TTCTTAGGAT ACCAAGGCAA  AGGCTTGATA GCCTCTGATT CACCACTCTC TACAGCCTAA GTATAAGGCA ACGAATCCAG GATTTGAGAA GTGACAAAAT ACTATATAGA CTTTCAATAA CGAGACAATA CAAACAGTTA  TTGAATTTAC CTCAGCCTGA AGAGATTCCA TGAAATCATT CTCCAACTTC AGTCGAAGAT CATCGCAAAA TTGGCCACTA AAAGAATCAT ATAAACAGAG ACCAACAAAA CAGAACAAAG  TCAAAAACAC TTTAACCAAA GTATACATTT TAACGATCCA AGAATGCAAA TAAACAAAGC ATACATACTT GGAATTAACT CTAAAAGCAG CAGGCAATGG CTTACGAAGA ATCTCCATAA  ACGAATCCCA CTCTTTTGCT TTCACTATCC TTTGCTCCTT ACACACCACA GCAAGACAAT ACGACATGTT GTTTAGAAGC AAGATCTGAG AATCCATAGA AGCCATTGGA TTCTATAAAG  TACCTTGTAG TACTCCTCGA AATCAAGATT TGACGAGATT GGCTTTTGGA AGTTGGAATC AAAGGAAGCA TCGGATTTGA GGGGTCTTTG GACATTCTCT TTACTCTTCT CGATCTGGTT  CCTCTTCGAA GTACCTCTGT GTCGTCTCCC TCTTCCCATC TTTGTTGTTT CCGTCGCCGT GTTTTCTTTT TTCGCCGGCG GCGTCGCAGC GATGGGTTTT ATGGGGTTTA TTACAGTAGA  TTTGTATTTT ACATTTTAAT TTTAAAGGAA AACATATGTT TGAAATTAAT CATACGCGCA ATGTTAGGCG CGTCGCCCGT GGTTATATTT GTATTGTGTG TCATTATTAT TTTATAAATG  GTTATATTTG TATTGTGTGT CATTATTATT TTATAAATGG TTATATTTGT ATTGTGTGTC ATTATTATTT TATAAATGGT TATAGAGTTT ACGAAATAAA AATAAAATTT GGAGAAATGA  GCTCTTATTT TGAATTTAAA ACCTAATTTA CTTTAAAATT ATTAGATTTT AAAGTAAATT AGGTTTATTA AAAAAGTACT TAAATTTTCA GAACTGAGCT TTCCTTTTCT CTCAGATTGA  TTACTGTGAG TCAAATTTTG AATTATTGAC TATTTAAAAT TTGATTTGAT TTTTTTTTTT GTAAAATTTT GAATGAATAC AGAGGAGATT ATGTTGTTAT GCCATGTAAG GTAAAGATTT  GAGAATGAAT AAAAATGTGT TTTGACTAAT AGTAGTCAAA GTCAATATAG ATATTAAGAA ACAAATTGAA TTACTAATGG AATAATAACT CTAGCAATTC GAGGAATGTT TATATATAAA 
AACATATAGA ATTAGAGATG AAACAAGATT ATTACATTTT AGCATCCAAA ATTGTAATTC GAATCAAAGG AAAAAGAAAT 

Retrieve as FASTA  
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAATCTAG TTCCAAATCT CTTCATGTGC CTACTACTTC TTTTCACGGT GGTGGCCGGA GAAACTCTCC AGCCAGCATT CTACGGGAAG ACATGCCCAA AAGCTGAATC CATCGTGAGG  GAAGAGATGA GAAAAGCTAT GTTGAAAGAA GCTCGAAGTG TTGCCTCCAT TATGCGTCTG CAGTTTCATG ATTGCTTCGT TAATGTAAAT AATTTATTAA CCACATGATT TTAATAGTTC  AATTCAGTTA TATATATATA TAAATATAAC CATATAACGT ATTTGTTTTG TGCTTTGTAG GGATGTGATG GCTCTGTATT GCTCGATGAC ACACCAACAT TGTTGGGAGA AAAACTCTCT  CTTGCAAACA TAGGCTCTTT GAGATCGTTT GATGTCGTAG ACAACATCAA AGAAGCATTA GAGAAGGCTT GTCCTGCCAC TGTATCTTGT GCTGACATTA TCATCATGGC TTCTCGTGAC  GCAGTTGCCC TTGTAAGTTT TAAAACACCT TACATTAAAT GAATAATATG AGTTACTGAT TAATTCGGTT CTTTGATAAT CTCAGACAGG AGGGCCGGAC TGGGAAGTAA AGCTAGGGAG  AAAAGACAGC TTAACCGCAA GCCAAAAAGA TTCAGACGAC ATAATGCCAA GTCCAAATGA TTCAACCGCC ACATCTTTGA TTGATCTCTT CCAAAGATTT AATCTTTCTA CAAAAGATAT  GGTGGCTCTA TCTGGATCAC ACTCTATCGG GGAAGCTCGA TGTTTCTCGG TCACGCCTAG ACTCTATAAC TATTCCGGTT CCGGGAAATC TGACCCGGCT TTCGAACCGC TTTACCGAGA  GAAATTGACC AAACTGTGTC CCATGGGAGG AGATGAAAAC GTTACAAGCG GTATGGACGC AACTGCTAAA GTGTTTGATA ACCAATACTT CAAAAACTTG GTTTCTAGGA AAGGGTTTCT  ACACTCTGAC CAGACGCTGT TCACTTCGCC GGAGACCAGA GAGTATGTGA AACTGTTCAG TGAGAACGAA ACAGAGTTCT TCAAAGCTTT TGCTGAAGGG ATGGTGAAGA TGGGTGACTT 
GCAGTCTACG AAACCTGGTG AAGTTAGGTT AAACTGTAGA GCTGTTAATC GAAAGAGCTA TTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAATCTAG TTCCAAATCT CTTCATGTGC CTACTACTTC TTTTCACGGT GGTGGCCGGA GAAACTCTCC AGCCAGCATT CTACGGGAAG ACATGCCCAA AAGCTGAATC CATCGTGAGG  GAAGAGATGA GAAAAGCTAT GTTGAAAGAA GCTCGAAGTG TTGCCTCCAT TATGCGTCTG CAGTTTCATG ATTGCTTCGT TAATGGATGT GATGGCTCTG TATTGCTCGA TGACACACCA  ACATTGTTGG GAGAAAAACT CTCTCTTGCA AACATAGGCT CTTTGAGATC GTTTGATGTC GTAGACAACA TCAAAGAAGC ATTAGAGAAG GCTTGTCCTG CCACTGTATC TTGTGCTGAC  ATTATCATCA TGGCTTCTCG TGACGCAGTT GCCCTTACAG GAGGGCCGGA CTGGGAAGTA AAGCTAGGGA GAAAAGACAG CTTAACCGCA AGCCAAAAAG ATTCAGACGA CATAATGCCA  AGTCCAAATG ATTCAACCGC CACATCTTTG ATTGATCTCT TCCAAAGATT TAATCTTTCT ACAAAAGATA TGGTGGCTCT ATCTGGATCA CACTCTATCG GGGAAGCTCG ATGTTTCTCG  GTCACGCCTA GACTCTATAA CTATTCCGGT TCCGGGAAAT CTGACCCGGC TTTCGAACCG CTTTACCGAG AGAAATTGAC CAAACTGTGT CCCATGGGAG GAGATGAAAA CGTTACAAGC  GGTATGGACG CAACTGCTAA AGTGTTTGAT AACCAATACT TCAAAAACTT GGTTTCTAGG AAAGGGTTTC TACACTCTGA CCAGACGCTG TTCACTTCGC CGGAGACCAG AGAGTATGTG  AAACTGTTCA GTGAGAACGA AACAGAGTTC TTCAAAGCTT TTGCTGAAGG GATGGTGAAG ATGGGTGACT TGCAGTCTAC GAAACCTGGT GAAGTTAGGT TAAACTGTAG AGCTGTTAAT 
CGAAAGAGCT ATTAA 

Retrieve as FASTA