Entry information : CbraPrx02 (g50465.t1/CHBRA832g00060)
Entry ID 12945
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2016-07-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-07-28 (Christophe Dunand)
Peroxidase information: CbraPrx02 (g50465.t1/CHBRA832g00060)
Name (synonym) CbraPrx02 (g50465.t1/CHBRA832g00060)
Class Class III peroxidase    [Orthogroup: Prx061]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraPrx02
start..stop
S start..stop
CbraPrx14 1038 0 1..500 1..500
CbraPrx03 410 3e-141 123..490 50..384
NhyPrx03 257 1e-82 136..488 1..307
CbraPrx04 250 6e-79 130..486 53..366
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 136697..138199 1503  
complement(join(136697..138199)


exon

Literature and cross-references CbraPrx02 (g50465.t1/CHBRA832g00060)
Protein sequence: CbraPrx02 (g50465.t1/CHBRA832g00060)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   500
PWM (Da):   %s   55051.23 Transmb domain:   %s   i20-42o
PI (pH):   %s   8.29
Sequence 0
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Send to Peroxiscan
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MARSGSLAGS TAMGGRRSHG GQAYLLVCLV GVGLLLLAMA EIRHAAASDG AGKGLGVEYK TENEKKSGDG EKYFKYPEKG DEKKGEEKKG EEKKGEEKKG EEKKGGEQQK GEEEKKGEGK  GVCNYFRGGP EPSYEKQPKE GEIDYSLYGK EGRACLLRAL HAATFEVLDR DKTMAATLLR MSFHDCLTRR DWAKGACDAS VLLPREINHP QNENLRRAAP VIYEIRERAA QQCNVVPTKA  DTIAAAGAAS IDWSDLENPE KYGFTIGRRD RNPESRGDNP MTLPLATETL DSNLAKFWAS GHLDAHDSTL FTIGGHSIGR SACEHFSFRL NNQTCCRPVD PTLDPRRACK LTQFCRSGDG  GEHHGDDGGA EGGRKMSGDG GKTRGEEHKA ESGYGGKTHG KEQRRVHFDF ITPFKLDTWY FKITLMNKGL LTTDHAFGHD PRTAPYVKFY AHNQQAFDVD YIKAFIKVSL VGINHHKTIV 
PNNYFYCKTG HQQSAKGFQH 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_832, no intron). Same sequence found two times in the scaffold (100149 and 138199). Long PS
DNA
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ATGGCCCGCA GTGGATCACT TGCGGGCTCG ACAGCTATGG GGGGAAGGAG AAGCCATGGA GGTCAAGCGT ACCTCCTTGT CTGTCTGGTC GGGGTCGGGC TACTCTTGCT GGCGATGGCA  GAGATACGGC ACGCGGCTGC ATCCGATGGC GCTGGAAAAG GATTAGGAGT GGAATATAAA ACCGAAAATG AAAAGAAATC CGGTGATGGT GAAAAATACT TCAAATATCC GGAAAAGGGG  GACGAGAAAA AGGGGGAGGA GAAAAAGGGG GAGGAGAAGA AGGGGGAGGA GAAAAAGGGG GAGGAGAAAA AGGGGGGAGA GCAGCAAAAG GGGGAGGAGG AGAAGAAGGG GGAGGGGAAG  GGGGTGTGCA ATTACTTTCG TGGGGGACCA GAACCTTCGT ACGAGAAGCA ACCGAAGGAA GGAGAGATAG ATTACTCTCT GTACGGTAAG GAAGGTCGAG CTTGTCTTCT GCGTGCTCTG  CATGCCGCCA CATTTGAAGT GCTCGACAGG GACAAGACCA TGGCGGCCAC GTTGCTGAGG ATGTCCTTCC ACGACTGCCT GACGCGCAGG GATTGGGCGA AGGGTGCATG CGATGCTTCC  GTGCTCCTTC CTCGAGAGAT CAACCACCCC CAGAACGAGA ACCTCCGACG CGCTGCCCCG GTGATCTACG AGATCCGGGA GCGCGCAGCG CAACAGTGCA ATGTGGTCCC CACCAAAGCC  GACACCATCG CGGCCGCCGG TGCTGCTTCC ATCGACTGGT CCGATCTGGA AAATCCGGAG AAGTACGGGT TCACAATCGG TCGTCGGGAT CGGAACCCCG AGTCCAGGGG CGATAACCCG  ATGACGCTCC CGCTCGCGAC CGAGACGCTG GACTCCAACC TGGCCAAGTT CTGGGCGTCG GGACACCTGG ATGCCCACGA CTCGACGCTC TTCACGATCG GAGGGCACAG CATCGGACGG  TCAGCGTGCG AGCATTTCTC CTTCCGATTG AACAACCAAA CGTGCTGCAG GCCCGTGGAC CCGACGCTGG ACCCTCGTCG CGCTTGCAAA CTCACCCAAT TCTGTCGGTC GGGCGATGGA  GGCGAGCATC ATGGTGATGA TGGTGGCGCA GAAGGAGGGA GGAAAATGTC GGGCGATGGC GGCAAGACTC GCGGCGAGGA ACACAAAGCA GAATCGGGCT ATGGCGGCAA AACTCACGGC  AAAGAACAGA GAAGAGTGCA CTTCGACTTC ATAACTCCTT TCAAACTGGA CACCTGGTAC TTCAAGATCA CGCTGATGAA CAAGGGATTG CTGACGACGG ATCACGCATT CGGACACGAC  CCCAGAACCG CACCGTACGT GAAGTTCTAC GCTCACAACC AGCAGGCCTT CGACGTAGAC TACATCAAGG CCTTCATCAA AGTCAGCCTC GTCGGCATCA ACCATCACAA GACCATCGTT 
CCAAACAACT ACTTCTACTG CAAAACCGGT CACCAACAAT CAGCTAAGGG GTTCCAGCAT TAG 

Retrieve as FASTA  
CDS
Send to BLAST
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ATGGCCCGCA GTGGATCACT TGCGGGCTCG ACAGCTATGG GGGGAAGGAG AAGCCATGGA GGTCAAGCGT ACCTCCTTGT CTGTCTGGTC GGGGTCGGGC TACTCTTGCT GGCGATGGCA  GAGATACGGC ACGCGGCTGC ATCCGATGGC GCTGGAAAAG GATTAGGAGT GGAATATAAA ACCGAAAATG AAAAGAAATC CGGTGATGGT GAAAAATACT TCAAATATCC GGAAAAGGGG  GACGAGAAAA AGGGGGAGGA GAAAAAGGGG GAGGAGAAGA AGGGGGAGGA GAAAAAGGGG GAGGAGAAAA AGGGGGGAGA GCAGCAAAAG GGGGAGGAGG AGAAGAAGGG GGAGGGGAAG  GGGGTGTGCA ATTACTTTCG TGGGGGACCA GAACCTTCGT ACGAGAAGCA ACCGAAGGAA GGAGAGATAG ATTACTCTCT GTACGGTAAG GAAGGTCGAG CTTGTCTTCT GCGTGCTCTG  CATGCCGCCA CATTTGAAGT GCTCGACAGG GACAAGACCA TGGCGGCCAC GTTGCTGAGG ATGTCCTTCC ACGACTGCCT GACGCGCAGG GATTGGGCGA AGGGTGCATG CGATGCTTCC  GTGCTCCTTC CTCGAGAGAT CAACCACCCC CAGAACGAGA ACCTCCGACG CGCTGCCCCG GTGATCTACG AGATCCGGGA GCGCGCAGCG CAACAGTGCA ATGTGGTCCC CACCAAAGCC  GACACCATCG CGGCCGCCGG TGCTGCTTCC ATCGACTGGT CCGATCTGGA AAATCCGGAG AAGTACGGGT TCACAATCGG TCGTCGGGAT CGGAACCCCG AGTCCAGGGG CGATAACCCG  ATGACGCTCC CGCTCGCGAC CGAGACGCTG GACTCCAACC TGGCCAAGTT CTGGGCGTCG GGACACCTGG ATGCCCACGA CTCGACGCTC TTCACGATCG GAGGGCACAG CATCGGACGG  TCAGCGTGCG AGCATTTCTC CTTCCGATTG AACAACCAAA CGTGCTGCAG GCCCGTGGAC CCGACGCTGG ACCCTCGTCG CGCTTGCAAA CTCACCCAAT TCTGTCGGTC GGGCGATGGA  GGCGAGCATC ATGGTGATGA TGGTGGCGCA GAAGGAGGGA GGAAAATGTC GGGCGATGGC GGCAAGACTC GCGGCGAGGA ACACAAAGCA GAATCGGGCT ATGGCGGCAA AACTCACGGC  AAAGAACAGA GAAGAGTGCA CTTCGACTTC ATAACTCCTT TCAAACTGGA CACCTGGTAC TTCAAGATCA CGCTGATGAA CAAGGGATTG CTGACGACGG ATCACGCATT CGGACACGAC  CCCAGAACCG CACCGTACGT GAAGTTCTAC GCTCACAACC AGCAGGCCTT CGACGTAGAC TACATCAAGG CCTTCATCAA AGTCAGCCTC GTCGGCATCA ACCATCACAA GACCATCGTT 
CCAAACAACT ACTTCTACTG CAAAACCGGT CACCAACAAT CAGCTAAGGG GTTCCAGCAT TAG 

Retrieve as FASTA