Entry information : CbraPrx04 (g46347.t1/CHBRA670g00230)
Entry ID 12947
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2016-07-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-07-28 (Christophe Dunand)
Peroxidase information: CbraPrx04 (g46347.t1/CHBRA670g00230)
Name (synonym) CbraPrx04 (g46347.t1/CHBRA670g00230)
Class Class III peroxidase    [Orthogroup: Prx060]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraPrx04
start..stop
S start..stop
CbraPrx06 611 0 1..365 1..366
CbraPrx13 478 2e-171 68..365 17..313
CbraPrx07 360 5e-124 23..366 30..367
CbraPrx11 359 2e-123 23..366 28..372
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 617817..618917 1101  
complement(join(617817..618917))


exon

Literature and cross-references CbraPrx04 (g46347.t1/CHBRA670g00230)
Protein sequence: CbraPrx04 (g46347.t1/CHBRA670g00230)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   366 (330)
PWM (Da):   %s   39136.9 (35197.0) Transmb domain:   %s   i21-43o
PI (pH):   %s   8.71 (8.48) Peptide Signal:   %s   cut: 37 range:37-366
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDHRWSSVRG APGGGRARFM LFVCLLCCLC FRSAVGQATV VVVQSGGSSH RPPPPVCASS PTQGVIDPTL YHPHDAACLM KSIKKYSYQE FLKDRPMAAS LLRLSFHDCL TKGGGCDASI  LKPGEITDPN NINEGLRITV PVITRIRQRA AEECGVYPTM ADAIARAGAA AIAFSGLADP TTAGFLLGRR DIADNQPGDD ARTLPDALEP LDNILTKLTG FGLSLREVTV FSLGGHSVGK  SACSHFNFRL NNGSTPGGCQ KPVDPTLDPA LACKLAKVCG DPNADVKFDF GTPFSLDNNY FKLLLKHQAL LRTDQAFATH SGTASFVREY ANGPKRFAKD FLKAFVKVEL VSINGPTTAP 
PKKYYY 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_670, no intron).
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCATC GGTGGAGTTC CGTTCGAGGA GCACCAGGAG GAGGACGGGC TCGTTTTATG TTATTCGTTT GTCTTCTTTG TTGCTTGTGC TTTCGCTCCG CGGTTGGTCA GGCGACGGTC  GTGGTGGTAC AGAGCGGAGG GAGTTCGCAT CGCCCTCCTC CTCCCGTGTG TGCTTCCAGC CCGACGCAGG GTGTCATCGA TCCTACTCTT TATCACCCTC ACGATGCAGC ATGTCTTATG  AAGTCCATCA AGAAGTACTC TTATCAGGAA TTTCTCAAGG ACAGGCCCAT GGCTGCCTCG CTGTTGCGGC TCTCCTTCCA CGATTGCTTG ACCAAGGGTG GCGGCTGCGA TGCGTCCATT  CTGAAGCCTG GCGAGATCAC GGATCCGAAT AACATCAACG AAGGACTGCG GATTACGGTG CCAGTCATCA CCAGGATTCG ACAGCGAGCG GCGGAGGAGT GCGGTGTGTA CCCGACGATG  GCGGACGCCA TAGCCAGAGC TGGCGCTGCT GCCATCGCCT TCTCTGGCCT TGCCGATCCC ACTACCGCCG GTTTCCTGCT GGGGAGACGG GACATTGCCG ACAATCAGCC TGGTGATGAC  GCCAGAACTC TGCCCGATGC TCTCGAGCCG CTCGATAACA TTCTCACAAA GCTTACAGGT TTCGGGTTGT CCTTGAGAGA AGTGACCGTT TTCTCTCTCG GAGGGCACAG TGTGGGCAAA  TCCGCCTGCT CTCACTTCAA CTTCAGACTC AACAACGGGA GCACGCCGGG CGGCTGCCAG AAACCGGTGG ACCCGACCCT CGATCCCGCC TTGGCCTGCA AGCTGGCGAA GGTCTGTGGG  GATCCGAACG CCGACGTGAA GTTTGACTTC GGGACGCCAT TTTCGCTGGA CAACAACTAC TTCAAGCTGC TGTTAAAACA TCAAGCTCTG CTGCGGACAG ATCAAGCGTT TGCAACCCAC  TCGGGGACAG CAAGCTTCGT CCGGGAATAC GCTAACGGAC CGAAACGGTT CGCGAAAGAT TTCCTGAAAG CCTTTGTCAA GGTGGAGCTT GTGAGCATCA ACGGTCCGAC CACTGCGCCG 
CCGAAGAAGT ACTATTACTG A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCATC GGTGGAGTTC CGTTCGAGGA GCACCAGGAG GAGGACGGGC TCGTTTTATG TTATTCGTTT GTCTTCTTTG TTGCTTGTGC TTTCGCTCCG CGGTTGGTCA GGCGACGGTC  GTGGTGGTAC AGAGCGGAGG GAGTTCGCAT CGCCCTCCTC CTCCCGTGTG TGCTTCCAGC CCGACGCAGG GTGTCATCGA TCCTACTCTT TATCACCCTC ACGATGCAGC ATGTCTTATG  AAGTCCATCA AGAAGTACTC TTATCAGGAA TTTCTCAAGG ACAGGCCCAT GGCTGCCTCG CTGTTGCGGC TCTCCTTCCA CGATTGCTTG ACCAAGGGTG GCGGCTGCGA TGCGTCCATT  CTGAAGCCTG GCGAGATCAC GGATCCGAAT AACATCAACG AAGGACTGCG GATTACGGTG CCAGTCATCA CCAGGATTCG ACAGCGAGCG GCGGAGGAGT GCGGTGTGTA CCCGACGATG  GCGGACGCCA TAGCCAGAGC TGGCGCTGCT GCCATCGCCT TCTCTGGCCT TGCCGATCCC ACTACCGCCG GTTTCCTGCT GGGGAGACGG GACATTGCCG ACAATCAGCC TGGTGATGAC  GCCAGAACTC TGCCCGATGC TCTCGAGCCG CTCGATAACA TTCTCACAAA GCTTACAGGT TTCGGGTTGT CCTTGAGAGA AGTGACCGTT TTCTCTCTCG GAGGGCACAG TGTGGGCAAA  TCCGCCTGCT CTCACTTCAA CTTCAGACTC AACAACGGGA GCACGCCGGG CGGCTGCCAG AAACCGGTGG ACCCGACCCT CGATCCCGCC TTGGCCTGCA AGCTGGCGAA GGTCTGTGGG  GATCCGAACG CCGACGTGAA GTTTGACTTC GGGACGCCAT TTTCGCTGGA CAACAACTAC TTCAAGCTGC TGTTAAAACA TCAAGCTCTG CTGCGGACAG ATCAAGCGTT TGCAACCCAC  TCGGGGACAG CAAGCTTCGT CCGGGAATAC GCTAACGGAC CGAAACGGTT CGCGAAAGAT TTCCTGAAAG CCTTTGTCAA GGTGGAGCTT GTGAGCATCA ACGGTCCGAC CACTGCGCCG 
CCGAAGAAGT ACTATTACTG A 

Retrieve as FASTA