Entry information : CbraPrx05 (g46342.t1/CHBRA670g00180)
Entry ID 12948
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2017-10-18 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2017-10-18 (Christophe Dunand)
Peroxidase information: CbraPrx05 (g46342.t1/CHBRA670g00180)
Name (synonym) CbraPrx05 (g46342.t1/CHBRA670g00180)
Class Class III peroxidase    [Orthogroup: Prx061]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraPrx05
start..stop
S start..stop
CbraPrx07 570 0 1..368 1..368
CbraPrx11 548 0 1..368 1..373
CbraPrx08 537 0 1..368 1..378
CbraPrx12 409 5e-143 1..368 1..369
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 470805..471911 1107  
complement(join(470805..471911))


exon

Literature and cross-references CbraPrx05 (g46342.t1/CHBRA670g00180)
Protein sequence: CbraPrx05 (g46342.t1/CHBRA670g00180)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   368 (324)
PWM (Da):   %s   38923.6 (34373.5)  
PI (pH):   %s   6.83 (5.94) Peptide Signal:   %s   cut: 45 range:45-368
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDHLSTSAFW CSGGEGRGRG GGGGSRRRAL CLFYCLCFSA AVVAAQTAGA PAARRPPPVY AANPTNGVID SSLYHPPDAQ CLLAAIKKAA SAIIVSDRTK AATLLRLVFH DCMTTGGGCE  ASILSDGEIN NPVNADLKRV VADIHTIRDQ AGRECGVLPT LADTIARAAA AAVTFGGLND VASSGFRLGR RDLAPGQPGN DPTTLPNENQ SLDAILSLFA TFGLTDEESI VWAIGGHSIG  VADCDHFKAR LSTDISSPGC LQPADPTLDP ALACRLAQQC SIQDIRLPFD FVTPFALDTS YFQLLLKNQG LLKTDQAFAV HPRTSDSVRQ YANTPGLFRV DFLRAFVKVS LFNVNSPQTA 
PPTQYYYP 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_670, one intron in 3' has been removed)
DNA
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCATC TGTCGACTTC TGCGTTTTGG TGTTCGGGAG GAGAGGGCCG GGGAAGAGGA GGAGGAGGAG GTAGTCGCCG ACGCGCCCTC TGCCTGTTTT ATTGTTTGTG TTTCTCTGCG  GCCGTGGTCG CTGCCCAGAC TGCCGGCGCT CCGGCTGCTA GACGTCCTCC TCCGGTGTAC GCTGCTAACC CGACGAACGG TGTCATCGAT TCTTCTCTTT ACCATCCTCC AGATGCGCAG  TGCCTTCTCG CAGCAATCAA GAAGGCTGCT TCCGCGATAA TCGTGAGCGA TCGGACGAAG GCTGCGACGC TGTTGCGACT CGTTTTCCAC GACTGCATGA CGACGGGCGG CGGCTGCGAG  GCGTCTATTC TGAGCGATGG CGAGATCAAC AATCCCGTCA ACGCCGACTT GAAGAGGGTG GTCGCTGACA TCCACACCAT TCGAGACCAG GCAGGAAGAG AATGCGGCGT GCTTCCGACG  TTGGCGGACA CCATAGCCAG AGCTGCCGCT GCGGCCGTCA CCTTCGGCGG CCTCAACGAT GTCGCTTCGT CTGGGTTCCG ACTAGGACGA CGGGACCTCG CTCCCGGTCA GCCTGGCAAT  GATCCGACTA CGTTGCCAAA CGAGAACCAA TCATTGGACG CCATTTTGTC ATTGTTTGCT ACCTTCGGCT TAACCGACGA GGAGAGCATC GTGTGGGCCA TAGGAGGCCA CAGTATCGGG  GTTGCCGATT GCGACCATTT CAAGGCGCGA TTGAGCACTG ACATCTCCTC TCCCGGCTGC TTGCAGCCGG CGGATCCGAC GCTCGATCCC GCTCTGGCTT GCAGATTGGC TCAACAGTGC  AGCATCCAAG ATATCCGCTT GCCCTTCGAC TTTGTGACTC CTTTCGCTCT GGATACCAGC TACTTCCAGC TGCTGCTGAA GAACCAAGGG CTTCTGAAAA CAGATCAAGC GTTCGCTGTC  CATCCCCGAA CGTCAGATTC CGTACGCCAG TACGCCAATA CGCCTGGACT ATTCAGGGTA GACTTCCTCA GGGCGTTCGT CAAGGTATCG CTCTTTAATG TCAACAGCCC CCAAACTGCG 
CCGCCGACCC AGTATTATTA CCCTTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCATC TGTCGACTTC TGCGTTTTGG TGTTCGGGAG GAGAGGGCCG GGGAAGAGGA GGAGGAGGAG GTAGTCGCCG ACGCGCCCTC TGCCTGTTTT ATTGTTTGTG TTTCTCTGCG  GCCGTGGTCG CTGCCCAGAC TGCCGGCGCT CCGGCTGCTA GACGTCCTCC TCCGGTGTAC GCTGCTAACC CGACGAACGG TGTCATCGAT TCTTCTCTTT ACCATCCTCC AGATGCGCAG  TGCCTTCTCG CAGCAATCAA GAAGGCTGCT TCCGCGATAA TCGTGAGCGA TCGGACGAAG GCTGCGACGC TGTTGCGACT CGTTTTCCAC GACTGCATGA CGACGGGCGG CGGCTGCGAG  GCGTCTATTC TGAGCGATGG CGAGATCAAC AATCCCGTCA ACGCCGACTT GAAGAGGGTG GTCGCTGACA TCCACACCAT TCGAGACCAG GCAGGAAGAG AATGCGGCGT GCTTCCGACG  TTGGCGGACA CCATAGCCAG AGCTGCCGCT GCGGCCGTCA CCTTCGGCGG CCTCAACGAT GTCGCTTCGT CTGGGTTCCG ACTAGGACGA CGGGACCTCG CTCCCGGTCA GCCTGGCAAT  GATCCGACTA CGTTGCCAAA CGAGAACCAA TCATTGGACG CCATTTTGTC ATTGTTTGCT ACCTTCGGCT TAACCGACGA GGAGAGCATC GTGTGGGCCA TAGGAGGCCA CAGTATCGGG  GTTGCCGATT GCGACCATTT CAAGGCGCGA TTGAGCACTG ACATCTCCTC TCCCGGCTGC TTGCAGCCGG CGGATCCGAC GCTCGATCCC GCTCTGGCTT GCAGATTGGC TCAACAGTGC  AGCATCCAAG ATATCCGCTT GCCCTTCGAC TTTGTGACTC CTTTCGCTCT GGATACCAGC TACTTCCAGC TGCTGCTGAA GAACCAAGGG CTTCTGAAAA CAGATCAAGC GTTCGCTGTC  CATCCCCGAA CGTCAGATTC CGTACGCCAG TACGCCAATA CGCCTGGACT ATTCAGGGTA GACTTCCTCA GGGCGTTCGT CAAGGTATCG CTCTTTAATG TCAACAGCCC CCAAACTGCG 
CCGCCGACCC AGTATTATTA CCCTTAG 

Retrieve as FASTA