Entry information : CbraPrx06 (g46334.t1/CHBRA670g00100)
Entry ID 12949
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2016-07-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-07-28 (Christophe Dunand)
Peroxidase information: CbraPrx06 (g46334.t1/CHBRA670g00100)
Name (synonym) CbraPrx06 (g46334.t1/CHBRA670g00100)
Class Class III peroxidase    [Orthogroup: Prx061]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraPrx06
start..stop
S start..stop
CbraPrx04 602 0 1..366 1..365
CbraPrx13 450 4e-160 70..366 18..313
CbraPrx11 355 7e-122 24..366 28..372
CbraPrx07 353 6e-121 24..366 30..366
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 334236..335336 1101  
join(334236..335336)


exon

Literature and cross-references CbraPrx06 (g46334.t1/CHBRA670g00100)
Protein sequence: CbraPrx06 (g46334.t1/CHBRA670g00100)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   366 (329)
PWM (Da):   %s   39521.18 (35541.3)  
PI (pH):   %s   9.57 (9.57) Peptide Signal:   %s   cut: 38 range:38-366
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDHRWSSGFR GAAGGGRAGF MLFVCLLYCL CFRSAVGQAT VAVVQSGGSS HRPPPPVCAS SPRQGVIDST LYHPGDAACL MKSIKKYSYQ EFLKDRPMAA TVLRLSFHDC MTKGGGCDAS  IFKPGEIRDP DDINEGVRIT VPVITRIRQR AAKECGVYPT MADTIARAGA AAIAFSGLAD PTTAGFLLGR RDIADNQTGD DPKTLPNAVE AFDVILRKLT GLGLSLREVT VFSLGGHSVG  KSACSHFKLR LNNGSTPGGC RKPVDPTLDP AFACKLAKLC RDPDADVSFD FGTPFSLDNK YFKLLLKHQA LLRIDQAFAT HSGTARFVRE YAKRPKRFAR DFLKAFVQVE LMNINGPTTA 
PPKYYY 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_670, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCATC GGTGGAGTTC CGGATTTCGA GGAGCAGCAG GAGGAGGACG GGCTGGTTTT ATGTTATTCG TTTGTCTGCT TTATTGCTTG TGCTTTCGCT CCGCGGTTGG TCAGGCTACG  GTCGCGGTGG TGCAGAGCGG AGGGAGTTCG CATCGCCCTC CTCCTCCCGT GTGTGCTTCC AGCCCGAGGC AGGGCGTCAT CGATTCTACT CTTTATCATC CTGGCGATGC AGCGTGTCTT  ATGAAGTCCA TCAAGAAGTA CTCTTATCAG GAATTTCTCA AGGACAGGCC CATGGCTGCC ACGGTGTTAC GGCTCTCCTT CCACGATTGC ATGACCAAGG GTGGCGGCTG CGATGCGTCC  ATTTTTAAGC CTGGCGAGAT CAGGGATCCG GATGACATCA ACGAAGGAGT GCGGATCACG GTGCCAGTCA TCACCAGGAT TCGACAGCGA GCGGCGAAGG AGTGCGGTGT GTACCCGACG  ATGGCGGACA CCATAGCCAG AGCTGGCGCT GCTGCCATCG CGTTCTCTGG CCTTGCCGAT CCCACCACCG CCGGTTTCCT GCTGGGGAGA AGGGACATTG CCGACAATCA GACTGGTGAC  GACCCCAAAA CTCTGCCCAA TGCTGTCGAG GCGTTCGATG TCATTCTGAG AAAGCTTACA GGTTTGGGGT TGTCCTTGAG AGAAGTGACC GTTTTCTCTC TCGGAGGGCA CAGTGTGGGC  AAATCCGCCT GCTCTCACTT CAAGTTGAGA CTCAACAACG GGAGCACGCC TGGCGGCTGC CGGAAACCGG TGGACCCGAC TCTCGATCCC GCCTTCGCCT GCAAGCTGGC GAAGCTCTGT  CGGGATCCGG ACGCCGACGT CTCGTTCGAC TTCGGGACGC CATTTTCGCT GGACAACAAG TACTTCAAGC TGCTGTTGAA ACATCAAGCT CTGCTGCGGA TAGATCAGGC GTTTGCAACC  CACTCGGGGA CAGCGCGCTT CGTCCGGGAA TACGCCAAGA GACCGAAACG TTTCGCGCGA GATTTCCTGA AAGCCTTCGT CCAGGTGGAG CTTATGAACA TCAACGGCCC GACCACTGCG 
CCGCCGAAGT ACTATTACTG A 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCATC GGTGGAGTTC CGGATTTCGA GGAGCAGCAG GAGGAGGACG GGCTGGTTTT ATGTTATTCG TTTGTCTGCT TTATTGCTTG TGCTTTCGCT CCGCGGTTGG TCAGGCTACG  GTCGCGGTGG TGCAGAGCGG AGGGAGTTCG CATCGCCCTC CTCCTCCCGT GTGTGCTTCC AGCCCGAGGC AGGGCGTCAT CGATTCTACT CTTTATCATC CTGGCGATGC AGCGTGTCTT  ATGAAGTCCA TCAAGAAGTA CTCTTATCAG GAATTTCTCA AGGACAGGCC CATGGCTGCC ACGGTGTTAC GGCTCTCCTT CCACGATTGC ATGACCAAGG GTGGCGGCTG CGATGCGTCC  ATTTTTAAGC CTGGCGAGAT CAGGGATCCG GATGACATCA ACGAAGGAGT GCGGATCACG GTGCCAGTCA TCACCAGGAT TCGACAGCGA GCGGCGAAGG AGTGCGGTGT GTACCCGACG  ATGGCGGACA CCATAGCCAG AGCTGGCGCT GCTGCCATCG CGTTCTCTGG CCTTGCCGAT CCCACCACCG CCGGTTTCCT GCTGGGGAGA AGGGACATTG CCGACAATCA GACTGGTGAC  GACCCCAAAA CTCTGCCCAA TGCTGTCGAG GCGTTCGATG TCATTCTGAG AAAGCTTACA GGTTTGGGGT TGTCCTTGAG AGAAGTGACC GTTTTCTCTC TCGGAGGGCA CAGTGTGGGC  AAATCCGCCT GCTCTCACTT CAAGTTGAGA CTCAACAACG GGAGCACGCC TGGCGGCTGC CGGAAACCGG TGGACCCGAC TCTCGATCCC GCCTTCGCCT GCAAGCTGGC GAAGCTCTGT  CGGGATCCGG ACGCCGACGT CTCGTTCGAC TTCGGGACGC CATTTTCGCT GGACAACAAG TACTTCAAGC TGCTGTTGAA ACATCAAGCT CTGCTGCGGA TAGATCAGGC GTTTGCAACC  CACTCGGGGA CAGCGCGCTT CGTCCGGGAA TACGCCAAGA GACCGAAACG TTTCGCGCGA GATTTCCTGA AAGCCTTCGT CCAGGTGGAG CTTATGAACA TCAACGGCCC GACCACTGCG 
CCGCCGAAGT ACTATTACTG A 

Retrieve as FASTA