Entry information : CbraPrx08 (g46329.t1)
Entry ID 12951
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2016-08-04 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-08-04 (Christophe Dunand)
Peroxidase information: CbraPrx08 (g46329.t1)
Name (synonym) CbraPrx08 (g46329.t1)
Class Class III peroxidase    [Orthogroup: Prx061]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraPrx08
start..stop
S start..stop
CbraPrx11 673 0 1..378 1..373
CbraPrx07 566 0 1..378 1..368
CbraPrx05 515 0 1..378 1..368
CbraPrx12 397 4e-138 1..378 1..369
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 174523..175659 1137  
join(174523..175659)


exon

Literature and cross-references CbraPrx08 (g46329.t1)
Protein sequence: CbraPrx08 (g46329.t1)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   378 (330)
PWM (Da):   %s   39902.16 (35503.2)  
PI (pH):   %s   8.12 (8.01) Peptide Signal:   %s   cut: 49 range:49-378
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDRLSSAAFR CSGRGGGGGG GGGGGGGSCL YALCLLFCLC FSAAGVAAQT ASVVIVHPRP DNRPPPPVYS SNPTKGVLDS SLYYPGDAQC LMAAIKKFAT AVVVRDRTKA ATLLRLVFHD  CMTTGGGCEA SILTDREINN AVNADLKRVV PDIHSIRDKA GRACGVLPTL ADTIARAAAA AVTFTGLNDV VSVGFDLGRR DLAPNEPGNE PTTLPNENQS LDAILSLFAT FGLTDKESTV  WSIGGHSIGV ADCIHFSSRL SNESTRPGCL QPADPTLDPG LACKLARHCS INKDIRLPFD FRTPFSLDTS YFQLLLKHQG LLRTDQAFAV HPRTSAFITQ YATSPGLFSG DFLKAFVKVS 
LFNVNSAQTA PPTKYYYP 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq.and genomic (scaffold_670, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCGTC TGTCGAGTGC TGCGTTTCGG TGTTCGGGAA GAGGAGGAGG AGGAGGAGGA GGAGGAGGAG GAGGAGGAGG TAGTTGCCTG TACGCCCTCT GCCTGCTTTT TTGCTTGTGT  TTCTCTGCGG CGGGGGTCGC TGCCCAGACT GCCAGCGTTG TGATTGTTCA TCCTCGTCCT GATAATCGCC CTCCTCCTCC GGTATACTCT TCTAACCCCA CCAAAGGTGT TCTCGATTCT  TCTCTTTACT ATCCTGGAGA TGCCCAGTGT CTTATGGCAG CTATCAAGAA GTTTGCTACC GCCGTAGTCG TGCGCGATCG GACGAAGGCT GCGACGCTGT TGCGACTCGT TTTCCACGAC  TGCATGACGA CGGGCGGCGG CTGCGAGGCG TCTATTCTGA CCGATCGCGA GATCAACAAT GCCGTCAACG CCGACTTGAA GCGGGTGGTC CCCGACATCC ACAGCATTCG AGACAAGGCG  GGAAGAGCAT GCGGCGTGCT TCCGACCTTG GCCGACACCA TAGCCAGAGC TGCCGCTGCG GCCGTCACCT TCACCGGCCT CAACGATGTC GTTTCGGTTG GGTTCGACTT GGGACGACGG  GACCTCGCTC CCAATGAGCC TGGCAATGAA CCGACTACTT TGCCGAACGA GAACCAGTCA TTGGACGCCA TTTTGTCATT GTTTGCTACC TTCGGCTTAA CCGACAAGGA GAGCACCGTG  TGGTCCATAG GCGGCCACAG TATCGGGGTT GCCGATTGCA TCCATTTCAG CTCGAGATTG AGCAATGAGA GCACTCGTCC GGGCTGCTTG CAGCCGGCGG ATCCGACGCT CGATCCGGGT  CTGGCTTGCA AATTGGCGCG ACACTGCAGC ATCAACAAGG ACATCCGCTT GCCCTTCGAC TTTCGGACTC CTTTCTCTCT GGACACCAGC TACTTCCAGC TGCTGCTnAA GCACCAAGGG  CTTCTGAGAA CAGATCAAGC ATTCGCTGTC CATCCCCGAA CGTCAGCTTT CATAACTCAG TACGCCACTT CGCCTGGACT ATTCAGCGGA GACTTCCTCA AGGCGTTCGT CAAGGTATCG 
CTCTTTAATG TCAACAGCGC CCAGACTGCG CCGCCGACCA AGTATTATTA CCCTTAA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCGTC TGTCGAGTGC TGCGTTTCGG TGTTCGGGAA GAGGAGGAGG AGGAGGAGGA GGAGGAGGAG GAGGAGGAGG TAGTTGCCTG TACGCCCTCT GCCTGCTTTT TTGCTTGTGT  TTCTCTGCGG CGGGGGTCGC TGCCCAGACT GCCAGCGTTG TGATTGTTCA TCCTCGTCCT GATAATCGCC CTCCTCCTCC GGTATACTCT TCTAACCCCA CCAAAGGTGT TCTCGATTCT  TCTCTTTACT ATCCTGGAGA TGCCCAGTGT CTTATGGCAG CTATCAAGAA GTTTGCTACC GCCGTAGTCG TGCGCGATCG GACGAAGGCT GCGACGCTGT TGCGACTCGT TTTCCACGAC  TGCATGACGA CGGGCGGCGG CTGCGAGGCG TCTATTCTGA CCGATCGCGA GATCAACAAT GCCGTCAACG CCGACTTGAA GCGGGTGGTC CCCGACATCC ACAGCATTCG AGACAAGGCG  GGAAGAGCAT GCGGCGTGCT TCCGACCTTG GCCGACACCA TAGCCAGAGC TGCCGCTGCG GCCGTCACCT TCACCGGCCT CAACGATGTC GTTTCGGTTG GGTTCGACTT GGGACGACGG  GACCTCGCTC CCAATGAGCC TGGCAATGAA CCGACTACTT TGCCGAACGA GAACCAGTCA TTGGACGCCA TTTTGTCATT GTTTGCTACC TTCGGCTTAA CCGACAAGGA GAGCACCGTG  TGGTCCATAG GCGGCCACAG TATCGGGGTT GCCGATTGCA TCCATTTCAG CTCGAGATTG AGCAATGAGA GCACTCGTCC GGGCTGCTTG CAGCCGGCGG ATCCGACGCT CGATCCGGGT  CTGGCTTGCA AATTGGCGCG ACACTGCAGC ATCAACAAGG ACATCCGCTT GCCCTTCGAC TTTCGGACTC CTTTCTCTCT GGACACCAGC TACTTCCAGC TGCTGCTnAA GCACCAAGGG  CTTCTGAGAA CAGATCAAGC ATTCGCTGTC CATCCCCGAA CGTCAGCTTT CATAACTCAG TACGCCACTT CGCCTGGACT ATTCAGCGGA GACTTCCTCA AGGCGTTCGT CAAGGTATCG 
CTCTTTAATG TCAACAGCGC CCAGACTGCG CCGCCGACCA AGTATTATTA CCCTTAA 

Retrieve as FASTA