View Redoxidase 12959

Entry information : CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )

Entry ID	12959
Creation	2014-09-09 (Christophe Dunand)
Last sequence changes	2016-02-16 (Achraf Jemmat)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2016-02-16 (Christophe Dunand)

Peroxidase information: CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )

Name (synonym)

CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )

Class

Atypical 2-Cysteine peroxiredoxin (type II) [Orthogroup: PrxII001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara

Organism

Chara braunii [TaxId: 69332 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	CbraPrxII01 start..stop	S start..stop
CpslPrxII01	243	1.9e-81	110..269	72..231
KflPrxII01	237	5.24e-80	110..269	2..161
PabPrxII178	238	3.3e-79	110..269	78..239
MpPrxII03	239	1.48e-78	80..269	118..311

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '12959' 'join(121788..122597)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	121788..122597	808
join(121788..122597)

Literature and cross-references CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )

Protein sequence: CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	269
PWM (Da):	27486.9
PI (pH):	8.28

Sequence
Send to BLAST
Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MAAATGSASL SLVGSSTAAR RVGTATPKVR AMAMPTSAHL CGLINRQSSC VGGSQIVRGS PCAPRRLVAI PSLFPSTSSS SVSSVSDASL SSGIRCQSSS SAPSATKAKT IAVGDSIPNV GLQYFDEEGV MQTVMTGDLA KGKKIVLFAV PGAFTPTCSQ KHLPAFVEKA DELNAKGVSV IACVSVNDPF VMQAWGKNVG VSDKVMLLAD GSGQFTQAMG VELDLIDRGL GVRSRRYAML
VDDGVVKICN LEEGGAFTNS GPESILEAL

Retrieve as FASTA

Remarks

Complete sequence from RNA seq and genomic (scaffold_288, no intron).

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGGCGGCGG CGACGGGATC CGCCTCACTT AGTCTTGTGG GCTCGTCTAC TGCTGCGCGT CGAGTCGGTA CGGCAACGCC TAAGGTCCGG GCGATGGCAA TGCCCACGTC CGCTCATCTG TGCGGATTGA TCAATCGGCA GTCGTCGTGC GTGGGGGGTT CGCAGATCGT GAGGGGAAGC CCTTGCGCGC CGCGACGACT GGTCGCGATC CCGTCCCTCT TCCCCTCAAC TTCCTCCTCC TCTGTCTCCT CTGTCTCTGA CGCCTCTCTT TCGTCAGGCA TCCGCTGCCA GTCGTCCTCC TCCGCGCCGA GCGCCACCAA GGCGAAGACC ATCGCTGTGG GCGATTCCAT CCCCAATGTC GGCCTTCAGT ACTTCGACGA GGAGGGCGTT ATGCAGACGG TAATGACGGG AGATCTGGCC AAGGGCAAGA AGATAGTCTT ATTCGCCGTG CCGGGGGCGT TCACACCTAC GTGTTCTCAG AAACATCTTC CTGCTTTTGT CGAGAAGGCG GATGAGCTTA ATGCCAAGGG CGTGAGCGTC ATCGCTTGCG TGTCAGTGAA CGATCCTTTC GTGATGCAGG CTTGGGGAAA AAACGTTGGG GTGTCCGACA AGGTGATGCT GCTAGCTGAC GGGAGTGGCC AGTTCACCCA GGCCATGGGA GTGGAGCTGG ATCTAATCGA TCGAGGTCTC GGTGTCAGGT CGCGACGCTA CGCCATGCTT
GTAGACGACG GGGTTGTCAA GATTTGCAAT CTGGAGGAAG GAGGCGCTTT CACCAATAGC GGCCCAGAGA GCATTCTCGA AGCCCTCTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA