Entry information : CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )
Entry ID 12959
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2016-02-16 (Achraf Jemmat)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-02-16 (Christophe Dunand)
Peroxidase information: CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )
Name (synonym) CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )
Class Atypical 2-Cysteine peroxiredoxin (type II)    [Orthogroup: PrxII001]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraPrxII01
start..stop
S start..stop
CpslPrxII01 243 2e-81 110..269 72..231
KflPrxII01 237 5e-80 110..269 2..161
PabPrxII178 238 3e-79 110..269 78..239
MpPrxII03 239 1e-78 80..269 118..311
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 121788..122597 810  
join(121788..122597)


exon

Literature and cross-references CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )
Protein sequence: CbraPrxII01 ( g23695.t1 / CHBRA288g00020 )
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   269
PWM (Da):   %s   27486.9  
PI (pH):   %s   8.28
Sequence
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Send to Peroxiscan
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MAAATGSASL SLVGSSTAAR RVGTATPKVR AMAMPTSAHL CGLINRQSSC VGGSQIVRGS PCAPRRLVAI PSLFPSTSSS SVSSVSDASL SSGIRCQSSS SAPSATKAKT IAVGDSIPNV  GLQYFDEEGV MQTVMTGDLA KGKKIVLFAV PGAFTPTCSQ KHLPAFVEKA DELNAKGVSV IACVSVNDPF VMQAWGKNVG VSDKVMLLAD GSGQFTQAMG VELDLIDRGL GVRSRRYAML 
VDDGVVKICN LEEGGAFTNS GPESILEAL 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_288, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCGG CGACGGGATC CGCCTCACTT AGTCTTGTGG GCTCGTCTAC TGCTGCGCGT CGAGTCGGTA CGGCAACGCC TAAGGTCCGG GCGATGGCAA TGCCCACGTC CGCTCATCTG  TGCGGATTGA TCAATCGGCA GTCGTCGTGC GTGGGGGGTT CGCAGATCGT GAGGGGAAGC CCTTGCGCGC CGCGACGACT GGTCGCGATC CCGTCCCTCT TCCCCTCAAC TTCCTCCTCC  TCTGTCTCCT CTGTCTCTGA CGCCTCTCTT TCGTCAGGCA TCCGCTGCCA GTCGTCCTCC TCCGCGCCGA GCGCCACCAA GGCGAAGACC ATCGCTGTGG GCGATTCCAT CCCCAATGTC  GGCCTTCAGT ACTTCGACGA GGAGGGCGTT ATGCAGACGG TAATGACGGG AGATCTGGCC AAGGGCAAGA AGATAGTCTT ATTCGCCGTG CCGGGGGCGT TCACACCTAC GTGTTCTCAG  AAACATCTTC CTGCTTTTGT CGAGAAGGCG GATGAGCTTA ATGCCAAGGG CGTGAGCGTC ATCGCTTGCG TGTCAGTGAA CGATCCTTTC GTGATGCAGG CTTGGGGAAA AAACGTTGGG  GTGTCCGACA AGGTGATGCT GCTAGCTGAC GGGAGTGGCC AGTTCACCCA GGCCATGGGA GTGGAGCTGG ATCTAATCGA TCGAGGTCTC GGTGTCAGGT CGCGACGCTA CGCCATGCTT 
GTAGACGACG GGGTTGTCAA GATTTGCAAT CTGGAGGAAG GAGGCGCTTT CACCAATAGC GGCCCAGAGA GCATTCTCGA AGCCCTCTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGCGGCGG CGACGGGATC CGCCTCACTT AGTCTTGTGG GCTCGTCTAC TGCTGCGCGT CGAGTCGGTA CGGCAACGCC TAAGGTCCGG GCGATGGCAA TGCCCACGTC CGCTCATCTG  TGCGGATTGA TCAATCGGCA GTCGTCGTGC GTGGGGGGTT CGCAGATCGT GAGGGGAAGC CCTTGCGCGC CGCGACGACT GGTCGCGATC CCGTCCCTCT TCCCCTCAAC TTCCTCCTCC  TCTGTCTCCT CTGTCTCTGA CGCCTCTCTT TCGTCAGGCA TCCGCTGCCA GTCGTCCTCC TCCGCGCCGA GCGCCACCAA GGCGAAGACC ATCGCTGTGG GCGATTCCAT CCCCAATGTC  GGCCTTCAGT ACTTCGACGA GGAGGGCGTT ATGCAGACGG TAATGACGGG AGATCTGGCC AAGGGCAAGA AGATAGTCTT ATTCGCCGTG CCGGGGGCGT TCACACCTAC GTGTTCTCAG  AAACATCTTC CTGCTTTTGT CGAGAAGGCG GATGAGCTTA ATGCCAAGGG CGTGAGCGTC ATCGCTTGCG TGTCAGTGAA CGATCCTTTC GTGATGCAGG CTTGGGGAAA AAACGTTGGG  GTGTCCGACA AGGTGATGCT GCTAGCTGAC GGGAGTGGCC AGTTCACCCA GGCCATGGGA GTGGAGCTGG ATCTAATCGA TCGAGGTCTC GGTGTCAGGT CGCGACGCTA CGCCATGCTT 
GTAGACGACG GGGTTGTCAA GATTTGCAAT CTGGAGGAAG GAGGCGCTTT CACCAATAGC GGCCCAGAGA GCATTCTCGA AGCCCTCTAG 

Retrieve as FASTA