Entry information : CbraAPx04 (g30060.t1/CHBRA352g00160)
Entry ID 12962
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2016-01-19 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-06-08 (Christophe Dunand)
Peroxidase information: CbraAPx04 (g30060.t1/CHBRA352g00160)
Name (synonym) CbraAPx04 (g30060.t1/CHBRA352g00160)
Class Ascorbate peroxidase    [Orthogroup: APx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraAPx04
start..stop
S start..stop
CbraAPx07 555 0 1..365 100..480
NhyAPx05 417 5e-145 36..365 121..462
CvuAPx05 411 6e-144 38..364 6..351
RobtAPx04 404 2e-141 36..363 3..335
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 489136..490266 1131  
complement(join(489136..490266))


exon

Literature and cross-references CbraAPx04 (g30060.t1/CHBRA352g00160)
Protein sequence: CbraAPx04 (g30060.t1/CHBRA352g00160)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   376
PWM (Da):   %s   41558.39 Transmb domain:   %s   o344-366i
PI (pH):   %s   9
Sequence 0
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Send to Peroxiscan
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MSLQPESRTA KVGDGGGKRS IWVRSPLGRH KWHPQAVLEQ LRCAREDLKV LIKEKNCNPI LVRLAWHDAG TYNQNISGWP FAGGAIGTIR YHPQLSHESN AGLVNAIKLL DPIREKYPAV  SNADLLQLAG ATAIEMAGGP TLPMKYGRID APSEEFCAPD NVLPMANPPD PAAHLRGVFY RMGFTDNDIV ALSGAHTLGR ARPERSGFGK IHTPYTKDGP GAPGGQSWTK EWLKFDNGYY  KEVRDKTDEH LLVLPTDAVL FQDEGFKVYA EKYAEDQDAF FRDYAEAHVK LSNLGCKFDP SQGIRLGDHP SQLSYRRTVK ALTASLNRFA AVAARLPQHG QQYTSTFLWV FALIAMLAVV 
VKLLTWDELP LAKRVG 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_352, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGAGCTTGC AACCAGAGTC GCGGACCGCC AAGGTAGGAG ATGGGGGCGG GAAGCGGAGC ATATGGGTAC GGAGCCCTTT GGGGCGCCAC AAGTGGCATC CCCAAGCGGT GCTCGAGCAA  CTGAGGTGTG CCCGGGAAGA TTTAAAGGTC CTGATAAAGG AGAAGAATTG CAATCCTATT CTTGTTCGAC TGGCATGGCA TGATGCAGGG ACTTACAACC AGAACATTTC AGGGTGGCCT  TTTGCAGGGG GGGCCATCGG TACCATTCGA TACCACCCCC AGCTGAGTCA TGAGTCCAAC GCAGGCTTGG TGAATGCCAT CAAGCTGCTT GATCCCATCA GAGAGAAGTA CCCTGCAGTT  AGTAATGCCG ATCTTCTCCA GCTCGCAGGC GCTACTGCAA TCGAGATGGC AGGAGGGCCG ACGCTCCCCA TGAAGTATGG TCGTATTGAC GCTCCATCCG AGGAGTTCTG CGCTCCCGAC  AACGTCTTAC CCATGGCTAA TCCTCCTGAC CCGGCTGCGC ATCTCCGAGG TGTGTTCTAC AGAATGGGTT TTACCGACAA TGACATCGTG GCGCTCTCCG GAGCGCACAC GCTAGGCCGA  GCTAGACCGG AACGCAGTGG GTTTGGCAAG ATCCATACAC CCTACACCAA GGATGGACCA GGCGCACCAG GCGGTCAATC CTGGACCAAA GAATGGCTCA AATTTGACAA CGGCTACTAC  AAGGAAGTAA GGGACAAAAC CGACGAGCAT CTGCTGGTCT TGCCCACCGA CGCTGTGCTG TTTCAAGATG AAGGGTTCAA GGTTTATGCA GAGAAGTATG CAGAGGATCA GGATGCGTTT  TTCCGGGACT ACGCGGAGGC GCATGTGAAG CTGAGCAACT TAGGGTGCAA GTTCGATCCC TCTCAAGGTA TCCGGCTTGG GGACCATCCT TCTCAATTGT CATACAGACG GACAGTCAAG  GCTTTGACAG CTAGTCTGAA CAGATTTGCT GCTGTAGCTG CCAGATTGCC TCAACACGGT CAACAGTATA CCAGCACATT CCTATGGGTC TTTGCGTTAA TCGCAATGCT AGCTGTAGTT 
GTAAAGCTTC TCACCTGGGA TGAGCTCCCA CTAGCAAAGA GGGTTGGATA A 

Retrieve as FASTA  
CDS
Send to BLAST
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ATGAGCTTGC AACCAGAGTC GCGGACCGCC AAGGTAGGAG ATGGGGGCGG GAAGCGGAGC ATATGGGTAC GGAGCCCTTT GGGGCGCCAC AAGTGGCATC CCCAAGCGGT GCTCGAGCAA  CTGAGGTGTG CCCGGGAAGA TTTAAAGGTC CTGATAAAGG AGAAGAATTG CAATCCTATT CTTGTTCGAC TGGCATGGCA TGATGCAGGG ACTTACAACC AGAACATTTC AGGGTGGCCT  TTTGCAGGGG GGGCCATCGG TACCATTCGA TACCACCCCC AGCTGAGTCA TGAGTCCAAC GCAGGCTTGG TGAATGCCAT CAAGCTGCTT GATCCCATCA GAGAGAAGTA CCCTGCAGTT  AGTAATGCCG ATCTTCTCCA GCTCGCAGGC GCTACTGCAA TCGAGATGGC AGGAGGGCCG ACGCTCCCCA TGAAGTATGG TCGTATTGAC GCTCCATCCG AGGAGTTCTG CGCTCCCGAC  AACGTCTTAC CCATGGCTAA TCCTCCTGAC CCGGCTGCGC ATCTCCGAGG TGTGTTCTAC AGAATGGGTT TTACCGACAA TGACATCGTG GCGCTCTCCG GAGCGCACAC GCTAGGCCGA  GCTAGACCGG AACGCAGTGG GTTTGGCAAG ATCCATACAC CCTACACCAA GGATGGACCA GGCGCACCAG GCGGTCAATC CTGGACCAAA GAATGGCTCA AATTTGACAA CGGCTACTAC  AAGGAAGTAA GGGACAAAAC CGACGAGCAT CTGCTGGTCT TGCCCACCGA CGCTGTGCTG TTTCAAGATG AAGGGTTCAA GGTTTATGCA GAGAAGTATG CAGAGGATCA GGATGCGTTT  TTCCGGGACT ACGCGGAGGC GCATGTGAAG CTGAGCAACT TAGGGTGCAA GTTCGATCCC TCTCAAGGTA TCCGGCTTGG GGACCATCCT TCTCAATTGT CATACAGACG GACAGTCAAG  GCTTTGACAG CTAGTCTGAA CAGATTTGCT GCTGTAGCTG CCAGATTGCC TCAACACGGT CAACAGTATA CCAGCACATT CCTATGGGTC TTTGCGTTAA TCGCAATGCT AGCTGTAGTT 
GTAAAGCTTC TCACCTGGGA TGAGCTCCCA CTAGCAAAGA GGGTTGGATA A 

Retrieve as FASTA