Entry information : CbraPrx11 (g46327.t1/CHBRA670g00030)
Entry ID 12968
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2016-07-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-07-28 (Christophe Dunand)
Peroxidase information: CbraPrx11 (g46327.t1/CHBRA670g00030)
Name (synonym) CbraPrx11 (g46327.t1/CHBRA670g00030)
Class Class III peroxidase    [Orthogroup: Prx061]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraPrx11
start..stop
S start..stop
CbraPrx08 654 0 1..373 1..378
CbraPrx07 561 0 1..373 1..368
CbraPrx05 511 0 1..373 1..368
CbraPrx12 393 1e-136 1..373 1..369
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 108726..109847 1122  
join(108726..109847)


exon

Literature and cross-references CbraPrx11 (g46327.t1/CHBRA670g00030)
Protein sequence: CbraPrx11 (g46327.t1/CHBRA670g00030)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   373
PWM (Da):   %s   39947.39  
PI (pH):   %s   8.74
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDRLSSSAFW CSGRGGGGGA EGSRLYALCV LYCLWFSVAG VAAQTASVVI VHPRPGDRPP SPVYSSNPTK GVLDSSLYHP ADAQCLMAAI KKFATAVIVR DRTKAATLLR LVFHDCMTTG  GGCEASILSD REINNKVNAD LKRVVPDIRS IRDKAGRACG VLPTLADTIA RAAAAAVTFT GLNDVVSVGF DLGRRDLARN QPGNEPTTLP NENQSLDAIL SLFATFGLTD KESTVWSIGG  HSIGVADCIH FSSRLSNESx RPGCLHPADP TLDPGLACKL ARHCRINKDI RLPFDFRTPF SLDTSYFQLL LKHQGLLRTD QAFAVHPRTS AFITQYATSP GLFSGDFLKA FVKVSLFNVN 
SAQTAPPTKY YYP 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and genomic (scaffold_670, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCGTC TGTCGAGTTC TGCGTTTTGG TGTTCGGGAA GAGGAGGAGG AGGAGGAGCA GAAGGTAGTC GCCTATACGC CCTCTGCGTG CTTTATTGCT TGTGGTTTTC TGTGGCGGGG  GTCGCTGCCC AGACTGCCAG CGTTGTGATT GTTCATCCTC GTCCTGGTGA TCGCCCTCCT TCTCCGGTGT ACTCTTCTAA CCCCACCAAA GGTGTTCTGG ATTCTTCTCT TTACCATCCT  GCAGATGCAC AGTGTCTCAT GGCAGCAATC AAGAAGTTTG CTACCGCCGT AATCGTGCGC GATCGGACGA AGGCTGCGAC GCTGTTGCGA CTCGTTTTCC ACGACTGCAT GACGACGGGC  GGCGGCTGCG AGGCGTCTAT TCTGAGCGAT CGCGAGATCA ACAATAAAGT CAACGCCGAC TTGAAGAGGG TTGTCCCCGA CATCCGCAGC ATTCGAGACA AGGCGGGAAG AGCATGCGGC  GTGCTTCCGA CCTTGGCCGA CACCATAGCC AGAGCTGCCG CTGCCGCCGT CACCTTCACC GGCCTCAACG ATGTCGTTTC GGTTGGGTTC GACTTGGGAC GACGGGACCT CGCTCGCAAT  CAGCCTGGCA ACGAACCGAC TACTTTGCCG AACGAGAACC AGTCATTGGA CGCCATTTTG TCATTGTTTG CTACCTTCGG CTTAACCGAC AAGGAGAGCA CCGTGTGGTC CATAGGCGGC  CACAGYATCG GGGTTGCCGA TTGCATCCAT TTCAGCTCGA GATTGAGCAA TGAGAGCnCT CGTCCGGGCT GCTTGCATCC GGCGGATCCG ACGCTCGATC CGGGTCTGGC TTGCAAATTG  GCGCGACACT GCCGCATCAA CAAGGACATC CGCTTGCCCT TCGACTTTCG GACTCCTTTC TCTCTGGACA CCAGCTACTT CCAGCTGCTG CTGAAGCACC AAGGGCTTCT GAGAACAGAT  CAAGCATTCG CTGTCCATCC CCGAACGTCA GCTTTCATAA CTCAGTACGC CACTTCGCCT GGACTATTCA GCGGAGACTT CCTCAAGGCG TTCGTCAAGG TATCGCTCTT TAATGTCAAC 
AGCGCCCAGA CTGCGCCGCC GACCAAGTAT TATTACCCTT AA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATCGTC TGTCGAGTTC TGCGTTTTGG TGTTCGGGAA GAGGAGGAGG AGGAGGAGCA GAAGGTAGTC GCCTATACGC CCTCTGCGTG CTTTATTGCT TGTGGTTTTC TGTGGCGGGG  GTCGCTGCCC AGACTGCCAG CGTTGTGATT GTTCATCCTC GTCCTGGTGA TCGCCCTCCT TCTCCGGTGT ACTCTTCTAA CCCCACCAAA GGTGTTCTGG ATTCTTCTCT TTACCATCCT  GCAGATGCAC AGTGTCTCAT GGCAGCAATC AAGAAGTTTG CTACCGCCGT AATCGTGCGC GATCGGACGA AGGCTGCGAC GCTGTTGCGA CTCGTTTTCC ACGACTGCAT GACGACGGGC  GGCGGCTGCG AGGCGTCTAT TCTGAGCGAT CGCGAGATCA ACAATAAAGT CAACGCCGAC TTGAAGAGGG TTGTCCCCGA CATCCGCAGC ATTCGAGACA AGGCGGGAAG AGCATGCGGC  GTGCTTCCGA CCTTGGCCGA CACCATAGCC AGAGCTGCCG CTGCCGCCGT CACCTTCACC GGCCTCAACG ATGTCGTTTC GGTTGGGTTC GACTTGGGAC GACGGGACCT CGCTCGCAAT  CAGCCTGGCA ACGAACCGAC TACTTTGCCG AACGAGAACC AGTCATTGGA CGCCATTTTG TCATTGTTTG CTACCTTCGG CTTAACCGAC AAGGAGAGCA CCGTGTGGTC CATAGGCGGC  CACAGYATCG GGGTTGCCGA TTGCATCCAT TTCAGCTCGA GATTGAGCAA TGAGAGCnCT CGTCCGGGCT GCTTGCATCC GGCGGATCCG ACGCTCGATC CGGGTCTGGC TTGCAAATTG  GCGCGACACT GCCGCATCAA CAAGGACATC CGCTTGCCCT TCGACTTTCG GACTCCTTTC TCTCTGGACA CCAGCTACTT CCAGCTGCTG CTGAAGCACC AAGGGCTTCT GAGAACAGAT  CAAGCATTCG CTGTCCATCC CCGAACGTCA GCTTTCATAA CTCAGTACGC CACTTCGCCT GGACTATTCA GCGGAGACTT CCTCAAGGCG TTCGTCAAGG TATCGCTCTT TAATGTCAAC 
AGCGCCCAGA CTGCGCCGCC GACCAAGTAT TATTACCCTT AA 

Retrieve as FASTA