Entry information : CbraPrx12 (g46325.t1/ CHBRA670g00010)
Entry ID 12969
Creation 2014-09-09 (Christophe Dunand)
Last sequence changes 2016-07-28 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2016-07-28 (Christophe Dunand)
Peroxidase information: CbraPrx12 (g46325.t1/ CHBRA670g00010)
Name (synonym) CbraPrx12 (g46325.t1/ CHBRA670g00010)
Class Class III peroxidase    [Orthogroup: Prx061]
Taxonomy Eukaryota Viridiplantae Streptophyta Charophyceae Characeae Chara
Organism Chara braunii    [TaxId: 69332 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value CbraPrx12
start..stop
S start..stop
CbraPrx07 421 1e-147 1..369 1..368
CbraPrx11 418 1e-146 1..369 1..373
CbraPrx05 408 8e-143 1..369 1..368
CbraPrx08 407 3e-142 1..369 1..378
Gene structure Fichier Exons
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 3023..4132 1110  
join(3023..4132)


exon

Literature and cross-references CbraPrx12 (g46325.t1/ CHBRA670g00010)
Protein sequence: CbraPrx12 (g46325.t1/ CHBRA670g00010)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   369 (319)
PWM (Da):   %s   37973.15 (32998.8) Transmb domain:   %s   i34-53o
PI (pH):   %s   8.59 (7.68) Peptide Signal:   %s   cut: 51 range:51-369
Sequence
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Send to Peroxiscan
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
MDCVSSSAFG CSGGKGRGGG GGGGGGRRRR RSRLYGVCLF FCLCFSAAVA GPATRPPPPV YASSPTKGDI DSSLYYPADA SCLMAAIKTA TTAILSQRQS RAATLLRLVF HDCMTKGGGC  DASILKPAEI NNPVNDGLSK VVDIITAVRK QAATQCGVLP TLADTIARAA AAAVSFSGLG DVVASGFKLG RRDVAPSQTG DNPATLPNEN QPLDDILNSF ASFGLSVQES TVWSIGGHSI  GEAGCIHFTN RLNTSGGAGS CLPPVDPTLD PVLACKLAAT CAAGAKGANF DFVTPKVLDV TYFQLLLKKQ GLLKSDQAFA GNARTAAYIQ LYANSPGQFA ADFLAAYVKV SLFNINGPTT 
APPTQYYFP 

Retrieve as FASTA  
Remarks Complete sequence from RNA seq and and genomic (scaffold_670, no intron).
DNA
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.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATTGTG TGTCGAGTTC TGCGTTTGGT TGTTCGGGAG GAAAGGGCCG GGGAGGAGGG GGGGGAGGAG GAGGAGGACG ACGACGACGA CGTAGTCGTC TGTACGGCGT CTGCCTCTTT  TTCTGCTTGT GTTTCTCTGC GGCGGTGGCC GGCCCCGCCA CTCGCCCTCC TCCTCCGGTG TACGCTTCTA GCCCGACGAA GGGTGATATC GATTCTTCTC TTTATTATCC TGCAGATGCA  TCGTGTCTTA TGGCAGCCAT CAAGACGGCC ACTACTGCTA TACTCAGCCA ACGTCAGTCC AGGGCTGCGA CGCTGCTGCG GCTCGTTTTC CACGACTGCA TGACCAAGGG CGGCGGCTGC  GACGCCTCCA TTCTGAAGCC TGCCGAGATT AACAATCCCG TCAACGACGG CTTGAGCAAG GTGGTCGATA TCATCACCGC CGTTCGCAAG CAGGCAGCAA CCCAATGCGG CGTGCTTCCC  ACGCTGGCGG ACACCATCGC CAGAGCTGCT GCTGCCGCCG TCTCCTTCTC CGGCCTCGGC GATGTCGTTG CCTCCGGCTT CAAGCTGGGA AGACGGGACG TCGCTCCCAG TCAGACTGGC  GACAATCCCG CTACTCTGCC CAACGAGAAC CAACCATTGG ACGACATCTT AAACTCCTTT GCTAGCTTCG GCTTAAGCGT CCAGGAGAGC ACCGTGTGGT CGATAGGCGG GCACAGCATC  GGCGAGGCCG GTTGTATCCA TTTCACTAAC AGATTGAACA CTTCGGGCGG TGCGGGAAGC TGCCTGCCAC CGGTAGATCC GACCCTGGAC CCCGTCCTGG CTTGCAAGTT GGCCGCAACG  TGTGCCGCCG GGGCTAAGGG CGCCAACTTC GACTTCGTTA CTCCGAAGGT TCTGGACGTC ACCTACTTCC AACTGCTGTT GAAGAAGCAA GGGCTTCTGA AATCAGATCA AGCGTTCGCA  GGAAATGCAC GGACGGCAGC GTACATTCAG CTGTACGCCA ATTCGCCGGG CCAATTCGCG GCAGACTTCC TCGCCGCGTA CGTAAAGGTG TCGCTCTTTA ATATCAATGG GCCAACGACT 
GCACCCCCGA CGCAGTATTA TTTCCCTTAG 

Retrieve as FASTA  
CDS
Send to BLAST
.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2
ATGGATTGTG TGTCGAGTTC TGCGTTTGGT TGTTCGGGAG GAAAGGGCCG GGGAGGAGGG GGGGGAGGAG GAGGAGGACG ACGACGACGA CGTAGTCGTC TGTACGGCGT CTGCCTCTTT  TTCTGCTTGT GTTTCTCTGC GGCGGTGGCC GGCCCCGCCA CTCGCCCTCC TCCTCCGGTG TACGCTTCTA GCCCGACGAA GGGTGATATC GATTCTTCTC TTTATTATCC TGCAGATGCA  TCGTGTCTTA TGGCAGCCAT CAAGACGGCC ACTACTGCTA TACTCAGCCA ACGTCAGTCC AGGGCTGCGA CGCTGCTGCG GCTCGTTTTC CACGACTGCA TGACCAAGGG CGGCGGCTGC  GACGCCTCCA TTCTGAAGCC TGCCGAGATT AACAATCCCG TCAACGACGG CTTGAGCAAG GTGGTCGATA TCATCACCGC CGTTCGCAAG CAGGCAGCAA CCCAATGCGG CGTGCTTCCC  ACGCTGGCGG ACACCATCGC CAGAGCTGCT GCTGCCGCCG TCTCCTTCTC CGGCCTCGGC GATGTCGTTG CCTCCGGCTT CAAGCTGGGA AGACGGGACG TCGCTCCCAG TCAGACTGGC  GACAATCCCG CTACTCTGCC CAACGAGAAC CAACCATTGG ACGACATCTT AAACTCCTTT GCTAGCTTCG GCTTAAGCGT CCAGGAGAGC ACCGTGTGGT CGATAGGCGG GCACAGCATC  GGCGAGGCCG GTTGTATCCA TTTCACTAAC AGATTGAACA CTTCGGGCGG TGCGGGAAGC TGCCTGCCAC CGGTAGATCC GACCCTGGAC CCCGTCCTGG CTTGCAAGTT GGCCGCAACG  TGTGCCGCCG GGGCTAAGGG CGCCAACTTC GACTTCGTTA CTCCGAAGGT TCTGGACGTC ACCTACTTCC AACTGCTGTT GAAGAAGCAA GGGCTTCTGA AATCAGATCA AGCGTTCGCA  GGAAATGCAC GGACGGCAGC GTACATTCAG CTGTACGCCA ATTCGCCGGG CCAATTCGCG GCAGACTTCC TCGCCGCGTA CGTAAAGGTG TCGCTCTTTA ATATCAATGG GCCAACGACT 
GCACCCCCGA CGCAGTATTA TTTCCCTTAG 

Retrieve as FASTA