Entry information : GbPrx40
Entry ID 13132
Creation 2015-04-13 (Christophe Dunand)
Last sequence changes 2015-04-13 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-12-05 (Christophe Dunand)
Peroxidase information: GbPrx40
Name GbPrx40
Class Class III peroxidase     [Orthogroup: Prx026]*
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx40
start..stop
S start..stop
PgPrx06 501 0 1..312 22..333
PabPrx93 501 0 1..312 22..333
PsiPrx02 501 0 1..312 22..333
PtaPrx54 494 3e-178 1..312 22..333
Literature and cross-references GbPrx40
Protein sequence: GbPrx40
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   313
PWM (Da):   %s   33378.15  
PI (pH):   %s   4.47
Sequence
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Send to Peroxiscan
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MGICPSSGKA QLSENFYATT CPNVESIVKQ AVSTKFQQTF VTVPGTLRLF FHDCFVEGCD ASVLIASTGD NTAEKDDEEN LSLAGDGFDT VNKAKQAVEA VCPNQVSCAD ILARATRDVI  GLSGGPAYNV ELGRRDGLIS KASRVHGNLP KANFDLDELI SLFASKGISQ TDMIALSGAH TVGFSHCNQL ANRIYNFSSS NAVDPTLDPS YATQLQQACP KDVDPSIAID MDPSTPRQFD 
NVYYTNLQSG KGLFTSDQVL FTESTSRSTV NEFASSESSF ETAFVTGMTN LGRVGVKTGN QGEIRQDCSA FNS 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no prediction from SymDB, scaffold4551) and RNA seq (gba_locus_25300_iso_1_len_824_ver_2, 5'end is missing) . No EST found. 5'end is missing.
DNA
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGAATTT GTCCGAGCAG TGGAAAAGCT CAACTTTCTG AGAATTTTTA TGCCACTACA TGTCCTAATG TTGAATCCAT TGTTAAACAG GCTGTTTCTA CCAAATTCCA ACAAACATTT  GTTACTGTTC CTGGTACTCT CAGACTCTTC TTCCATGACT GTTTTGTTGA GGTAAGAAAA CCCAATTAAT ACAATGTTTT TCAATTGAAT TAAAAAAATA ATTAGCGGAA TTTGTTATGG  TATTAATGGT TCTGTTATTT TTTTTCTGCA AAGGGATGTG ATGCCTCCGT GCTTATTGCA TCCACCGGAG ACAATACAGC AGAGAAAGAT GACGAGGAGA ACTTATCTCT GGCAGGGGAT  GGATTCGATA CTGTGAACAA GGCTAAGCAA GCTGTAGAGG CAGTGTGTCC CAACCAGGTT TCTTGTGCAG ATATCCTTGC TCGGGCTACC AGAGATGTTA TTGGGCTGGT GAGTTTGAAT  CCTGTAATTC TTAATTTTAA TTCATTAAAT CTTATTTGTA ATTAATTCAT TCAATGCAGC CTATATGCAG ATGTTATAAG GTAATGCCTG CAAGTAATTG ATTTTATTAA TCTAGTAATG  ATTAATTAAG TACATATTTG CAGAGTGGAG GTCCTGCATA TAATGTGGAA TTAGGTCGTA GAGATGGATT GATATCGAAG GCTTCGAGAG TGCATGGAAA TCTACCAAAG GCCAACTTTG  ATCTCGATGA ACTGATTTCT CTGTTTGCTT CCAAGGGCAT TTCACAGACA GACATGATTG CACTTTCAGG TAATTTGATT AATTAATTTA TTAATTGCCA TTTTTCTGGG TATTTTTTAC  CTATTTGTAT TTTGAATCCA ATCCATGGAT TTTGTCTCTG CTCAAATATT TTTTTGTTAT TTTCCAATAT GGGTTGTTCA TAGATAAATG TATTCTCATG TGGGTCTGAT TGATGGCAAT  CATAAAGCTT AGAATATTAA ATCATTATTG AATTTATTGT TTTGGGTTGT GCAGGGGCGC ATACAGTAGG ATTTTCTCAC TGCAATCAGT TGGCAAATAG AATTTATAAC TTCAGTTCTT  CGAATGCAGT TGATCCCACT CTGGATCCTT CATACGCCAC ACAGCTACAA CAAGCCTGCC CCAAGGACGT TGATCCGTCA ATTGCCATAG ACATGGATCC GTCAACTCCC AGACAATTTG  ACAATGTTTA TTACACAAAC CTGCAATCTG GGAAAGGGCT TTTCACCTCT GATCAAGTGC TCTTCACAGA ATCCACGTCA AGAAGTACAG TGAACGAGTT TGCGTCCAGT GAAAGTTCGT 
TTGAAACTGC GTTTGTAACG GGCATGACAA ACCTTGGTCG TGTGGGAGTG AAGACAGGCA ACCAGGGAGA AATTAGACAG GATTGCAGTG CCTTCAATTC ATGA 

Retrieve as FASTA  
CDS
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGAATTT GTCCGAGCAG TGGAAAAGCT CAACTTTCTG AGAATTTTTA TGCCACTACA TGTCCTAATG TTGAATCCAT TGTTAAACAG GCTGTTTCTA CCAAATTCCA ACAAACATTT  GTTACTGTTC CTGGTACTCT CAGACTCTTC TTCCATGACT GTTTTGTTGA GGGATGTGAT GCCTCCGTGC TTATTGCATC CACCGGAGAC AATACAGCAG AGAAAGATGA CGAGGAGAAC  TTATCTCTGG CAGGGGATGG ATTCGATACT GTGAACAAGG CTAAGCAAGC TGTAGAGGCA GTGTGTCCCA ACCAGGTTTC TTGTGCAGAT ATCCTTGCTC GGGCTACCAG AGATGTTATT  GGGCTGAGTG GAGGTCCTGC ATATAATGTG GAATTAGGTC GTAGAGATGG ATTGATATCG AAGGCTTCGA GAGTGCATGG AAATCTACCA AAGGCCAACT TTGATCTCGA TGAACTGATT  TCTCTGTTTG CTTCCAAGGG CATTTCACAG ACAGACATGA TTGCACTTTC AGGGGCGCAT ACAGTAGGAT TTTCTCACTG CAATCAGTTG GCAAATAGAA TTTATAACTT CAGTTCTTCG  AATGCAGTTG ATCCCACTCT GGATCCTTCA TACGCCACAC AGCTACAACA AGCCTGCCCC AAGGACGTTG ATCCGTCAAT TGCCATAGAC ATGGATCCGT CAACTCCCAG ACAATTTGAC  AATGTTTATT ACACAAACCT GCAATCTGGG AAAGGGCTTT TCACCTCTGA TCAAGTGCTC TTCACAGAAT CCACGTCAAG AAGTACAGTG AACGAGTTTG CGTCCAGTGA AAGTTCGTTT 
GAAACTGCGT TTGTAACGGG CATGACAAAC CTTGGTCGTG TGGGAGTGAA GACAGGCAAC CAGGGAGAAA TTAGACAGGA TTGCAGTGCC TTCAATTCAT GA 

Retrieve as FASTA