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Entry information : GbPrx42
Entry ID 13134
Creation 2015-04-14 (Christophe Dunand)
Last sequence changes 2015-04-14 (Christophe Dunand)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2020-12-09 (Christophe Dunand)
Peroxidase information: GbPrx42
Name GbPrx42
Class Class III peroxidase    [Orthogroup: Prx187]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx42
start..stop		 S start..stop
GbPrx54 497 1.05e-178 15..338 17..337
GbPrx12 486 2.66e-174 3..338 4..334
GbPrx06 456 1.1e-162 10..338 12..339
PtaPrx60 456 3.38e-162 10..338 15..346
Literature and cross-references GbPrx42
Protein sequence: GbPrx42
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   338
PWM (Da):   %s   36043.18 Transmb domain:   %s   i7-29o
PI (pH):   %s   7.31
Sequence
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Send to Peroxiscan
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MAYSKNAAAV NGVVELIIIA LVMISGGSAG DYNGLTPNFY DKSCPEVLSI VRSVVEKAVA KEARMAASLL RLHFHDCFVQ GCDGSLLLDD TPTFRGEKTA VPNNNSVRGF DVIDEIKREV  ESACPGVVSC ADIIAIAARD SVVLSGGPEW SVAVGRRDSR GASLSGANRN IPAPNNTLSA LITKFKRQGL DQVDLVALSG GHTIGQSRCT SFRQRLYNQT GKGEANLTIQ SNYLGELKSA 
CPISGGDNNL SPLDVVSPTQ FNNHYFLNLK SGRGLLNSDV QLLYAGSNDQ FITGLVDAYA ADQTLFFNQF ADSMVKMGSI KPLTGSMGEI RTNCRRMN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no prediction from SymDB, scaffold33242 short PS is missing due to scaffold border, 7 mismatches) and RNA seq (gba_locus_35301_iso_1_len_1278_ver_2). No EST found.
CDS►
Send to BLAST
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ATGGCTTATA GCAAAAATGC AGCAGCAGTG AATGGTGTAG TAGAGCTGAT TATTATTGCA CTTGTAATGA TATCGGGGGG GAGTGCGGGC GATTATAATG GGTTGACGCC CAACTTTTAT  GACAAATCTT GTCCGGAGGT TCTGTCAATA GTGAGGTCGG TGGTAGAAAA GGCAGTTGCC AAGGAGGCTC GAATGGCGGC ATCCTTACTT CGTCTTCATT TCCACGATTG TTTTGTCCAG  GGCTGCGACG GTTCCTTGTT GTTAGACGAC ACCCCGACAT TTAGAGGAGA GAAAACAGCA GTCCCCAATA ACAACTCTGT GAGAGGATTT GACGTGATCG ACGAAATCAA AAGGGAGGTG  GAGAGTGCGT GCCCGGGAGT TGTGTCTTGC GCCGATATCA TCGCCATTGC AGCTCGAGAT TCGGTCGTCC TGAGTGGAGG ACCAGAGTGG AGTGTAGCCG TGGGAAGAAG GGACTCGAGG  GGCGCCAGCT TAAGCGGGGC GAATCGGAAC ATTCCAGCCC CCAACAACAC CCTCAGCGCT CTCATCACAA AGTTCAAACG ACAAGGCCTC GACCAGGTCG ACTTGGTTGC ACTTTCAGGT  GGCCACACCA TCGGGCAGAG TCGATGCACA AGCTTCAGGC AGCGCCTCTA CAACCAGACT GGAAAGGGAG AAGCCAATCT GACCATCCAG AGCAATTATT TGGGCGAACT GAAGAGCGCA  TGCCCGATAT CAGGTGGAGA CAACAACTTG TCCCCTTTGG ATGTTGTTAG CCCCACCCAG TTTAACAACC ACTATTTCCT CAACCTTAAG AGCGGGCGAG GACTGCTGAA TTCCGACGTC  CAGCTGCTCT ACGCCGGATC AAATGATCAA TTCATCACGG GGCTTGTCGA TGCATATGCT GCTGACCAGA CCTTGTTCTT CAACCAATTT GCAGACTCCA TGGTTAAGAT GGGCAGCATT 
AAACCTCTCA CCGGATCCAT GGGAGAAATC AGAACCAATT GTCGTCGAAT GAATTGA 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
TTGTAAGGTG TGTTTTGCAT CGATATATAG ATAGCTAGAT GACGACGACT TTGCAATCAA ATCCAAGTGT GCTAATTTGA GAGAGGAGGA ATATATATAG AATTAAGCTG TAGAATTCCA  GTGTTGCAGC GGCTGGTTAT CACTAAAATG GCTTATAGCA AAAATGCAGC AGCAGTGAAT GGTGTAGTAG AGCTGATTAT TATTGCACTT GTAATGATAT CGGGGGGGAG TGCGGGCGAT  TATAATGGGT TGACGCCCAA CTTTTATGAC AAATCTTGTC CGGAGGTTCT GTCAATAGTG AGGTCGGTGG TAGAAAAGGC AGTTGCCAAG GAGGCTCGAA TGGCGGCATC CTTACTTCGT  CTTCATTTCC ACGATTGTTT TGTCCAGGGC TGCGACGGTT CCTTGTTGTT AGACGACACC CCGACATTTA GAGGAGAGAA AACAGCAGTC CCCAATAACA ACTCTGTGAG AGGATTTGAC  GTGATCGACG AAATCAAAAG GGAGGTGGAG AGTGCGTGCC CGGGAGTTGT GTCTTGCGCC GATATCATCG CCATTGCAGC TCGAGATTCG GTCGTCCTGA GTGGAGGACC AGAGTGGAGT  GTAGCCGTGG GAAGAAGGGA CTCGAGGGGC GCCAGCTTAA GCGGGGCGAA TCGGAACATT CCAGCCCCCA ACAACACCCT CAGCGCTCTC ATCACAAAGT TCAAACGACA AGGCCTCGAC  CAGGTCGACT TGGTTGCACT TTCAGGTGGC CACACCATCG GGCAGAGTCG ATGCACAAGC TTCAGGCAGC GCCTCTACAA CCAGACTGGA AAGGGAGAAG CCAATCTGAC CATCCAGAGC  AATTATTTGG GCGAACTGAA GAGCGCATGC CCGATATCAG GTGGAGACAA CAACTTGTCC CCTTTGGATG TTGTTAGCCC CACCCAGTTT AACAACCACT ATTTCCTCAA CCTTAAGAGC  GGGCGAGGAC TGCTGAATTC CGACGTCCAG CTGCTCTACG CCGGATCAAA TGATCAATTC ATCACGGGGC TTGTCGATGC ATATGCTGCT GACCAGACCT TGTTCTTCAA CCAATTTGCA  GACTCCATGG TTAAGATGGG CAGCATTAAA CCTCTCACCG GATCCATGGG AGAAATCAGA ACCAATTGTC GTCGAATGAA TTGACCACAC GATTTCCTCC CTTGTAGACA TATTTCGGAC 
TAGTCCGATG AGAATCATAT ATAACTTCTC TGCAATTCCA AACGACATAA TATTTATCAA TTTTAATTAA ACTTAAAA 

Retrieve as FASTA