Entry information : GbPrx44
Entry ID 13136
Creation 2015-04-14 (Christophe Dunand)
Last sequence changes 2015-04-14 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-12-06 (Christophe Dunand)
Peroxidase information: GbPrx44
Name GbPrx44
Class Class III peroxidase    [Orthogroup: Prx017]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx44
start..stop
S start..stop
GbPrx[P]85 556 0 19..332 1..314
PabPrx170 437 4e-155 6..328 10..339
PtaPrx92 429 6e-152 6..328 10..340
PabPrx74 426 7e-151 11..328 11..333
Literature and cross-references GbPrx44
Protein sequence: GbPrx44
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   332 (305)
PWM (Da):   %s   35788.3 (32844.7) Transmb domain:   %s   i5-27o
PI (pH):   %s   9.83 (9.96) Peptide Signal:   %s   cut: 28 range:28-332
Sequence
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Send to Peroxiscan
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MRNSVCLHST VALLLIWVLV VSHTVDGHRS GLKVGYYRRT CPAAENIVRA TVAKAVKANR GVAAGLIRMH FHDCFVRGCD GSILIDSTPG NKAEKDSPTN NPSLHGFEVI DEAKAKIEAK  CPHVVSCADI LAFAARDSAY QTGKSRWQVP AGRRDGRTSR DTDIIGNLPP PSFNVDQLTQ NFAAKGLSQE DMVTLSGAHS LGVSHCSSFS SRLQSKSNGT LDPRLAATLR AKCAPQLAGI 
SDPTVAMDSF TPAILDNKYY KGLLLNRGLF TSDQTLLTNP FTSGIVHLNS KNPSLWRDKF GSAMVRMGAI DVLTGSKGEI RRNCRIINSN YY 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no prediction from SymDB, scaffold1440) and RNA seq. (gba_locus_49153_iso_1_len_1135_ver_2, rame shift in the assembly).. No EST found.
DNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGGAATT CAGTTTGTCT TCATTCAACT GTGGCTCTAC TGTTAATATG GGTAATGGTA GTTAGTCATA CGGTTGATGG CCACCAATCT GGGTTAAAGG TGGGCTACTA CAGCCGCACA  TGCCCTGCGG CTGAGGACAT TGTAAGAGCA ACTGTGGCCA AGGCTGTGAA GGCAAATCGT GGTGTAGCCG CGGGTCTCAT ACGGATGCAT TTTCACGATT GCTTTGTCAG AGTAAGTACT  CATTACATAT AATTATAACA TTTGGGCATG AATTCAACTT TATAATGATC TCATCGATTG TTATGTTGAA TTTACAGGGT TGCGATGGGT CAATCCTGAT CGATTCCACC CCTGGAAATA  AAGCAGAGAA AGATTCACCT GCGAACAATC CCAGTCTTCA TGGGTTCGAA GTAATCGACG AAGCGAAGGC CAAAATAGAA GCCAAATGTC CACAAGTCGT GTCGTGTGCT GACATACTCG  CCTTTGCGGC ACGAGACAGT GCATATCAGG TAATTATTAC ATATTTTATC CATATTCTTA TATACCCACA GTTGCAATAC TCTAATGTTA ATGTTAATGT TAATGTACTG TTATCAACCA  ATAACAAGAT TTCTCCAATA TTCTGCACAC ATTAATTGAT GGCAGAGTTA TTTTCTTGAA TGTGTAGACT GGTAAGAGTC GATGGCAGGT TCCAGCTGGA AGAAGGGATG GAAGGACATC  TCGAGACACC GATATTATAG GAAATCTGCC TCCTCCTTCA TTGAATGTCG ACCAGTTGAC ACAGAATTTC GCAGCAAAGG GTCTTTCACA GGAAGACATG GTCACTCTTT CAGGTACCAG  CCTATAACCC TACCCAATAT TACTGATTTA TTTATTTAGC AAAAAAAAAT CATCATAATC AAAAAATAAT AATAATAATC ATAATACTTG GTTTGTCATA TAATCTCTCT CTTTCAGGGG  CACATTCTCT AGGGGTTTCG CATTGTTCTT CATTCAGCAG TAGGCTTCAA TCCAAATCCA ACGGAACTCT CGACCCTCGA CTTGCCGCCA CGCTCAGAGC TAAATGCGCG CCCCAGTTGG  CCGGAATTTC CGTCGACCCA ACCGTGGCCA TGGACTCTTT CACTCCTGCT ATTCTCGATA ATAAATACTA CAAGGGCCTT CTTCTCAACC GTGGATTGTT TACCTCCGAT CAAACACTAC  TCACCAATCC TTTCACCTCC GGCATGGTCC ACCTCAACTC CAAAAACCCA TCGCTCTGGC GTGACAAATT CGGCTCTGCA ATGGTAAGGA TGGGTGCGAT CGACGTCTTG ACCGGATCTA 
AGGGCGAGAT CAGAAGAAAC TGTCGAATCA TTAATTCCAA CTATTATTAA 

Retrieve as FASTA  
CDS
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGAGGAATT CAGTTTGTCT TCATTCAACT GTGGCTCTAC TGTTAATATG GGTATTGGTA GTTAGTCATA CGGTTGATGG CCACCGATCT GGGTTAAAGG TGGGCTACTA CCGCCGCACA  TGCCCTGCGG CTGAGAACAT TGTAAGAGCA ACTGTGGCCA AGGCTGTGAA GGCAAATCGT GGTGTAGCCG CGGGTCTCAT ACGGATGCAT TTTCACGATT GCTTTGTCAG AGGTTGCGAC  GGGTCAATCC TGATCGATTC CACCCCTGGA AATAAAGCAG AGAAAGATTC ACCTACGAAC AATCCCAGTC TTCATGGGTT CGAAGTAATC GACGAAGCAA AGGCCAAAAT AGAAGCCAAA  TGTCCACACG TCGTGTCGTG TGCTGACATA CTCGCCTTTG CGGCACGAGA TAGTGCATAT CAGACTGGTA AGAGTCGATG GCAGGTTCCA GCTGGAAGAA GGGACGGAAG GACATCTCGA  GACACCGATA TTATAGGAAA TCTGCCTCCT CCTTCATTCA ATGTCGACCA GTTGACACAG AATTTCGCAG CAAAGGGTCT TTCACAGGAG GACATGGTCA CTCTTTCAGG GGCACATTCT  CTAGGGGTTT CGCATTGTTC TTCATTCAGC AGTAGGCTTC AATCCAAATC CAACGGAACT CTCGACCCTC GACTTGCCGC CACGCTCAGA GCTAAATGCG CGCCCCAGTT GGCCGGAATT  TCCGACCCAA CCGTGGCCAT GGACTCTTTC ACTCCTGCTA TTCTCGATAA TAAATACTAC AAGGGCCTTC TTCTCAACCG TGGATTGTTT ACCTCCGATC AAACACTACT CACCAATCCT  TTCACCTCCG GCATAGTCCA CCTCAACTCC AAAAACCCAT CGCTCTGGCG TGACAAATTC GGCTCTGCAA TGGTAAGGAT GGGTGCGATC GACGTCTTGA CCGGATCTAA GGGCGAGATC 
AGAAGAAACT GTCGAATCAT TAATTCCAAC TATTATTAA 

Retrieve as FASTA  
cDNA
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAATTATGAG GAATTCAGTT TGTCTTCATT CAACTGTGGC TCTACTGTTA ATATGGGTAT TGGTAGTTAG TCATACGGTT GATGGCCACC GATCTGGGTT AAAGGTGGGC TACTACCGCC  GCACATGCCC TGCGGCTGAG AACATTGTAA GAGCAACTGT GGCCAAGGCT GTGAAGGCAA ATCGTGGTGT AGCCGCGGGT CTCATACGGA TGCATTTTCA CGATTGCTTT GTCAGAGGTT  GCGACGGGTC AATCCTGATC GATTCCACCC CTGGAAATAA AGCAGAGAAA GATTCACCTA CGAACAATCC CAGTCTTCAT GGGTTCGAAG TAATCGACGA AGCAAAGGCC AAAATAGAAG  CCAAATGTCC ACACGTCGTG TCGTGTGCTG ACATACTCGC CTTTGCGGCA CGAGATAGTG CATATCAGAC TGGTAAGAGT CGATGGCAGG TTCCAGCTGG AAGAAGGGAC GGAAGGACAT  CTCGAGACAC CGATATTATA GGAAATCTGC CTCCTCCTTC ATTCAATGTC GACCAGTTGA CACAGAATTT CGCAGCAAAG GGTCTTTCAC AGGAGGACAT GGTCACTCTT TCAGGGGCAC  ATTCTCTAGG GGTTTCGCAT TGTTCTTCAT TCAGCAGTAG GCTTCAATCC AAATCCAACG GAACTCTCGA CCCTCGACTT GCCGCCACGC TCAGAGCTAA ATGCGCGCCC CAGTTGGCCG  GAATTTCCGA CCCAACCGTG GCCATGGACT CTTTCACTCC TGCTATTCTC GATAATAAAT ACTACAAGGG CCTTCTTCTC AACCGTGGAT TGTTTACCTC CGATCAAACA CTACTCACCA  ATCCTTTCAC CTCCGGCATA GTCCACCTCA ACTCCAAAAA CCCATCGCTC TGGCGTGACA AATTCGGCTC TGCAATGGTA AGGATGGGTG CGATCGACGT CTTGACCGGA TCTAAGGGCG  AGATCAGAAG AAACTGTCGA ATCATTAATT CCAACTATTA TTAAATGCAT CCAAATGCGT CCTGCGCAGA ACAATTTCGA TAATTAAGTT GTCATATACG CCTGCAAAAT GATCTCCTTG 
CCAATAATCT AGTTTGCAAA ACTAGTTATA AAAAGA 

Retrieve as FASTA