View Redoxidase 13194

Entry information : SpolPrx07 (Spipo13G0024100 [2.0] / Peroxidase55)

Entry ID	13194
Creation	2015-05-28 (Christophe Dunand)
Last sequence changes	2015-05-28 (Christophe Dunand)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2016-02-26 (Catherine Mathe)

Peroxidase information: SpolPrx07 (Spipo13G0024100 [2.0] / Peroxidase55)

Name (synonym)

SpolPrx07 (Spipo13G0024100 [2.0] / Peroxidase55)

Class

Class III peroxidase [Orthogroup: Prx031]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolPrx07 start..stop	S start..stop
VvPrx65	444	2.09e-158	1..319	1..322
LminPrx71	437	1.66e-155	9..319	8..319
LminPrx49	431	3.69e-153	9..319	8..319
CescPrx56	429	1.8e-152	19..319	18..319

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	1509282..1509491	208	N° 2	1509826..1510017	190	N° 3	1510116..1510673	556
join(1509282..1509491,1509826..1510017,1510116..1510673)

Literature and cross-references SpolPrx07 (Spipo13G0024100 [2.0] / Peroxidase55)

DNA ref.	Phytozome 12: pseudo13 (1509282..1510673)
Cluster/Prediction ref.	Phytozome Gene 12: 31519414

Protein sequence: SpolPrx07 (Spipo13G0024100 [2.0] / Peroxidase55)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	319 (296)
PWM (Da):	34348.45 (31706.1)
PI (pH):	4.93 (4.90)	Peptide Signal:	cut: 24 range:24-319

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MESWRRLSSLAVLLLMAAGQVESQLRTDFYASTCPDVESIVREEVRKKFVQTFVTVPATLRLFFHDCFVEGCDASVIIASPNGDAEKDADENISLAGDGFDTVIKAKTAVESRCPGVVSC
ADILALATRDVVVLSGGPSFTVELGRLDGLISQRSRVAGKLPKPDQSLDQLNAIFKQNNLTETDVIILSGAHTLGFAHCGTFSDRLYSNPDPTLNADFARQLQDACPRNVDPLVAINLDV
NTPRTFDNVFFSNLVEGKGLLRSDQVLFSDPRSRSKVVEFAGNAAGFGAAFADAMVRLGRVGVKTGSGGEIRRDCAAFN*

Retrieve as FASTA

Remarks

Complete sequence from genomic (introns 1 and 2).

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

CAAAGAGATG AGCTGGAAGA GAAAACTTGT AGACACAATT TTATAGTAGC TCACTTTCAA TAAGAGAGTT ATATGTTGGC CTAGAATTTC TTATATAATG TTGCAATTAG TGCACAACTT AACATGATGT AAGATGAAAA TAGAGACTTG AGAGTTTTTT TCCTTATGCT GGGCAAAACA AACTAGATTA TCCATAACTT AAAATTTTAG AGCAGCCAAG ATTGATCTTG GGAATCTTCC TAATGGTTTA AGTTTAAAGA AAAAGACTAT GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGGAT GAGAGATTCT CATTGGCCTT CTGTTGTACC AATTAAAATG ACAATAAAAC ATTTTTTGGC ATTTTAAATA TAACATTGCC AAGCCTACAT AAATTTGAGG CTACTTTCCT TTTTGTACTC AATATTGAGG TCCACCCATG AAGGAAAGCT AGGTCAAGCA ACATCTGTGT TTAACTGACC TCTTAACATC CATAAGATAC AAGTCATTAA GTGCGGATGA ACATCCACAC GAATATGAAG TTATCAGCCG TAGATAACAG GAAACGCGGC CACTCGATCC TTCTGACCTT TTTCTTATCT CATTATTTCC TTCGATGAAA GTCAACACTT CCAGGAGCAA GAGTACCCTC CATGTGCTTG CACACATTAT TTGTTCGAAT TTGGTGGCCA TAATGAATAC TGATCAGAAA ATAATATTAT CGCTTAGGGT TTGGTTGTCT GTTGATGCCT AGATGGAACT AACAAGATTC TTCTCCATCA TGAACGTCAA TGCCAGAGTT TTGTTGCACC AACTCTCTAC CATCGTTGAC CGTTGGAGAT AATTAATGTA CTCGGAATTT CTGCAATTCA GTAAGATCTT GGAGTTTCAG GCCTGGCCCT GCCAACCCCG GGCCAAGTGT GAAACCCCTC GCTTCAGAGA AGCTGGACTG ATATTCGCTT CACGGCAAGG AACGGCTTGC AGTGAACCGC CGCACGGCGG CGGGATCGAG TCCGCGGCAC CAATCGGCGA GGTTCAATAG CACTCGTGAG CGGCGATGTG CCTGGACGAG TGCAGTGTGA GACAACTCAG CGGCCTACGT CGGCAGGTGT CCGGCACGGC AGCCTGGGGA CCCCGCGGCA CTTCGCAGAG AACTCAGCGT GAAGAAGACC CGGCGCAGCT GCGCAACCTG CAGGGCGGAC ACAGCGGATT CGGCCTGCGG GGGGTGCACA TGGGTTGGTG AGATTTGGCC GCCTACTAGG TGACGTTCTA GAAGGGTGGC TCTGGTGAGA GTTACGGGAG CCCTGCAGTT GGGATGTCTG CACAGGGCGA TGAACCCTAG AGCTTGCTCT CTCTCCCATT ACTGGAGGTC AATGGTGAAG GCTTCCCCTC GGCATGGCCG GGTGCTTCTA GCACTGCTTG GGATTGGCAG AGCAATGTTG AGGCCAGCAC GCGCCAACGC TCTGGAAAAT GAAATTCTGG AACCCTGATA AAACCTGATT CGGCTCAGAT TCGGCCTGCG ATCCTAGAGT AATAGTTTGC GTGTGAGCGC ACGTCAGAGA TTACCGAAGT CTTCACCATC CTGGGACGGT TCATCTGAGG CTCGACAAGG TTTTCTTGCA AATATTATAA CAAAGCGAGA GAGAGACAGA GGATGACAAA TGGACTGGGA GGAGTCCAAA TTCAAGCTGT GGAAGGTGAT CCGTCAGCAT CCAAGAAAAT ACCCATCTGG CCTTTTTTTG ATTGGGGTAC TTGGCAGTTC TTGCCAAATT TCCATCGTAG GTCAACAACG CGGGTCGGGA TGCCGAGTCG CATGTGCCAT GGGTGTCCGC GGGGATGGAC GAGGTCAATG GCATTGCACC CATAAAGCCT CCGAAGCCCC ATCGTAGAGC AAGTCCCTGG CTTCTCTCTC TCTCTCTATC ATTTCCGGTC CCCCTTCTCT TTCTCTCTCG GTGCTGAATA CGAGCTCGAG TGTTGGGGAG ATGGAGTCAT GGAGGAGACT ATCGTCTCTG GCTGTACTGC TGCTGATGGC TGCCGGGCAA GTAGAATCCC AGCTGAGGAC TGACTTCTAC GCCTCGACCT GCCCCGACGT TGAGTCCATC GTGAGAGAGG AGGTGAGGAA GAAGTTCGTC CAGACCTTCG TCACCGTCCC GGCCACGCTG AGGCTTTTCT TCCACGACTG CTTCGTCGAG GTACGCTTCG ACAATCTACA CATCCCGTAG GACATCGCTG CTGTTGGGGT GCAAGCCCAC GAAGATAATA GATATATTTT CCTTGTGAGA GCGTGTGTGT GTGTGTGTGT GTGTGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGCCGTA AGGGAGAGCT CTTAGAGGAG ACCAACAACC CTTACGAACT CTTAAATGTC GGAAGGTCTG ATACCACCGC CGTGAGGTGG GGTTGCTCTA GCTGTCGACG ATTCGGCTCA CCCAACACGA AGAGTTCCTC GTCGACTTAA ATAAACCGCG TCTGAAATCA CATCGGCGGT GAAAAATCTC GCAGGGATGC GACGCTTCGG TGATAATCGC CTCGCCGAAC GGCGACGCCG AAAAGGACGC CGATGAGAAC ATCTCCCTCG CCGGAGACGG GTTCGACACA GTCATCAAGG CCAAGACCGC CGTGGAGAGC AGGTGCCCCG GCGTCGTCTC CTGCGCCGAC ATTCTCGCCC TCGCCACCAG AGACGTCGTC GTCCTCGTAA GCCCACCACC TCCTCCTCCT CTGCTCATCA TCCTCCACAC TCAGACCCGG TATTCAATTC CCTAATGTTT TTCCTTTTTC CGACGCGGAA CCAGTCCGGA GGGCCGTCGT TCACTGTGGA ATTAGGCCGC TTGGACGGTC TCATCTCGCA GAGATCGCGG GTAGCAGGCA AGCTGCCGAA ACCAGACCAA AGCCTTGATC AGCTCAACGC AATCTTCAAG CAGAACAACC TCACTGAAAC CGACGTGATC ATCCTCTCCG GCGCCCACAC CCTCGGCTTC GCCCACTGCG GCACCTTCTC GGACCGCCTC TACTCCAACC CTGATCCCAC GCTCAACGCC GACTTTGCCC GGCAACTGCA GGACGCCTGC CCGCGCAACG TTGACCCGCT GGTTGCCATC AACCTGGATG TCAACACCCC GAGGACTTTC GACAACGTCT TCTTCAGCAA CCTGGTCGAG GGAAAGGGGC TGCTAAGGTC TGACCAGGTG CTGTTCTCGG ACCCACGGTC CCGGAGCAAG GTGGTGGAGT TCGCCGGCAA CGCCGCCGGG TTCGGCGCCG CCTTCGCCGA CGCGATGGTC CGCCTGGGAA GGGTGGGGGT GAAGACTGGC AGCGGCGGCG
AGATACGGCG GGACTGCGCC GCTTTCAACT G

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAGTCATGGAGGAGACTATCGTCTCTGGCTGTACTGCTGCTGATGGCTGCCGGGCAAGTAGAATCCCAGCTGAGGACTGACTTCTACGCCTCGACCTGCCCCGACGTTGAGTCCATC
GTGAGAGAGGAGGTGAGGAAGAAGTTCGTCCAGACCTTCGTCACCGTCCCGGCCACGCTGAGGCTTTTCTTCCACGACTGCTTCGTCGAGAGGTACGCTTCGACAATCTACACATCCCGT
AGGACATCGCTGCTGTTGGGGTGCAAGCCCACGAAGATAATAGATATATTTTCCTTGTGAGAGCGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCG
TAAGGGAGAGCTCTTAGAGGAGACCAACAACCCTTACGAACTCTTAAATGTCGGAAGGTCTGATACCACCGCCGTGAGGTGGGGTTGCTCTAGCTGTCGACGATTCGGCTCACCCAACAC
GAAGAGTTCCTCGTCGACTTAAATAAACCGCGTCTGAAATCACATCGGCGGTGAAAAATCTCGCAGGGATGCGACGCTTCGGTGATAATCGCCTCGCCGAACGGCGACGCCGAAAAGGAC
GCCGATGAGAACATCTCCCTCGCCGGAGACGGGTTCGACACAGTCATCAAGGCCAAGACCGCCGTGGAGAGCAGGTGCCCCGGCGTCGTCTCCTGCGCCGACATTCTCGCCCTCGCCACC
AGAGACGTCGTCGTCCTCTCGTAAGCCCACCACCTCCTCCTCCTCTGCTCATCATCCTCCACACTCAGACCCGGTATTCAATTCCCTAATGTTTTTCCTTTTTCCGACGCGGAACCAGTC
CGGAGGGCCGTCGTTCACTGTGGAATTAGGCCGCTTGGACGGTCTCATCTCGCAGAGATCGCGGGTAGCAGGCAAGCTGCCGAAACCAGACCAAAGCCTTGATCAGCTCAACGCAATCTT
CAAGCAGAACAACCTCACTGAAACCGACGTGATCATCCTCTCCGGCGCCCACACCCTCGGCTTCGCCCACTGCGGCACCTTCTCGGACCGCCTCTACTCCAACCCTGATCCCACGCTCAA
CGCCGACTTTGCCCGGCAACTGCAGGACGCCTGCCCGCGCAACGTTGACCCGCTGGTTGCCATCAACCTGGATGTCAACACCCCGAGGACTTTCGACAACGTCTTCTTCAGCAACCTGGT
CGAGGGAAAGGGGCTGCTAAGGTCTGACCAGGTGCTGTTCTCGGACCCACGGTCCCGGAGCAAGGTGGTGGAGTTCGCCGGCAACGCCGCCGGGTTCGGCGCCGCCTTCGCCGACGCGAT
GGTCCGCCTGGGAAGGGTGGGGGTGAAGACTGGCAGCGGCGGCGAGATACGGCGGGACTGCGCCGCTTTCAACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA