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Entry information : GbPrx04(Ginbil_Gb_00859 Ginbil_2002209_SGTW)
Entry ID 1320
Creation 2005-06-21 (Christophe Dunand)
Last sequence changes 2015-02-13 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-11-23 (Christophe Dunand)
Peroxidase information: GbPrx04(Ginbil_Gb_00859 Ginbil_2002209_SGTW)
Name GbPrx04(Ginbil_Gb_00859 Ginbil_2002209_SGTW)
Class Class III peroxidase    [Orthogroup: Prx030]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type Microsporophylls
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx04
start..stop		 S start..stop
PtaPrx129 550 0 1..329 7..331
PabPrx75 491 1.65e-176 1..329 1..327
PabPrx107 485 3.88e-174 1..329 7..334
PabPrx148 471 1.06e-169 56..329 1..270
Literature and cross-references GbPrx04(Ginbil_Gb_00859 Ginbil_2002209_SGTW)
Literature Brenner,E.D., Twigg,R.W., Runko,S.J., Katari,M.S., Dedhia,N.N., O'Shaughnessy,A.L., Balija,V., Martienssen,R.A., McCombie,R.W., Benfey,P., Coruzzi,G. and Stevenson,D. Expressed tag sequences from Ginkgo microsporophyll
EST ref. GenBank:   DR064878.1 [5' end]  DR064716.1 [3' end]
Protein sequence: GbPrx04(Ginbil_Gb_00859 Ginbil_2002209_SGTW)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   329 (307)
PWM (Da):   %s   36046.97 (33486.6) Transmb domain:   %s   i7-24o
PI (pH):   %s   4.88 (4.68) Peptide Signal:   %s   cut: 23 range:23-329
Sequence
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Send to Peroxiscan
*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAINVRILFL LMLMCALATT RACLRGFLKP DHYQWTCPEA EAIVFAGVEK AVAQEARMAA SLLRLHFHDC FVNGCDASVL LDDTVFFTGE KTATPNANSL RGFEVIDSIK EELEFLCPGT  VSCADILAIA ARDSVVLTGG PSWPVQMGRR DSLTASKVTA NNNIPAPSSN VATLISKFQN VGLTDEDMVT LSGAHTIGKA RCSTFNNRLL NQAGTGSPDP TLQKEFLTSL QQLCLERVNN 
NNTVTVLDLE TPLTFDNQYY QNLASGEGLL NSDQVLFSSG GNTKQLVEYY IQNQEAFFDN FKTSMIRMGN IQPLTGTDGE IRRNCRFIN* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (incorrect predict, PS is partial, 2nd accessions), 3 ESTs (DR064716 and DR065288) (also ip85d10.g1.b and ip92g08.g1.b in the Vicogenta database) and RNA seq (gba_locus_91041_iso_1_len_961_ver_2). Assembly by the PeroxiBase team. 5' end is missing.
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCCATTA ATGTAAGGAT TTTGTTTCTG TTAATGTTGA TGTGTGCATT GGCAACCACA AGAGCATGCC TTCGTGGGTT CTTGAAGCCT GACCATTATC AATGGACGTG CCCAGAAGCC  GAAGCCATAG TTTTTGCTGG CGTGGAAAAG GCTGTTGCTC AAGAGGCACG GATGGCTGCC TCTCTACTGC GTCTCCATTT TCATGACTGC TTCGTCAATG GTTGTGATGC CTCAGTATTG  CTGGATGATA CAGTATTTTT TACAGGAGAA AAGACTGCAA CACCCAATGC CAACTCTCTC CGAGGATTTG AAGTCATAGA TTCTATCAAG GAAGAGTTGG AGTTTCTATG TCCTGGAACT  GTTTCCTGTG CTGATATTCT TGCAATTGCA GCACGTGATT CAGTAGTCTT GACAGGTGGA CCGTCATGGC CGGTGCAAAT GGGCAGGCGA GACAGTTTAA CCGCAAGCAA AGTAACAGCA  AACAACAATA TACCGGCTCC TTCATCCAAT GTTGCAACAC TCATCTCCAA GTTTCAGAAT GTAGGCCTCA CAGATGAAGA TATGGTGACA CTCTCAGGTG CACATACAAT AGGGAAAGCA  CGCTGCTCCA CATTCAACAA CAGACTTCTG AACCAGGCGG GTACAGGATC ACCTGATCCC ACTCTTCAAA AAGAGTTTCT GACATCATTG CAACAACTCT GTTTGGAAAG AGTGAATAAT  AACAACACTG TAACTGTTCT AGACTTGGAG ACTCCACTCA CCTTTGACAA CCAATATTAC CAAAACTTGG CTTCTGGTGA AGGCCTTCTG AATTCCGATC AGGTGCTCTT CTCCAGTGGA  GGAAACACGA AGCAGTTGGT GGAATACTAC ATTCAAAACC AAGAAGCTTT TTTCGACAAC TTCAAAACAT CAATGATCAG AATGGGAAAC ATTCAGCCTC TCACAGGTAC CGATGGAGAG 
ATTCGTCGCA ATTGCCGTTT TATTAATTAA 

Retrieve as FASTA  
cDNA►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
GGTTTTAATA AAATTCTTGT TATAAATAAG GGCGCTGGGA TCTTCAGTAT CCACATAGCT ATTATCAGAG AACATACAGA ATTAGCAGTT TATTCAGATA ATTTTTTTCT CAGTCGTTGT  GATTGTTTCG TCTGAGATTA GTGCATTATG GCCATTAATG TAAGGATTTT GTTTCTGTTA ATGTTGATGT GTGCATTGGC AACCACAAGA GCATGCCTTC GTGGGTTCTT GAAGCCTGAC  CATTATCAAT GGACGTGCCC AGAAGCCGAA GCCATAGTTT TTGCTGGCGT GGAAAAGGCT GTTGCTCAAG AGGCACGGAT GGCTGCCTCT CTACTGCGTC TCCATTTTCA TGACTGCTTC  GTCAATGGTT GTGATGCCTC AGTATTGCTG GATGATACAG TATTTTTTAC AGGAGAAAAG ACTGCAACAC CCAATGCCAA CTCTCTCCGA GGATTTGAAG TCATAGATTC TATCAAGGAA  GAGTTGGAGT TTCTATGTCC TGGAACTGTT TCCTGTGCTG ATATTCTTGC AATTGCAGCA CGTGATTCAG TAGTCTTGAC AGGTGGACCG TCATGGCCGG TGCAAATGGG CAGGCGAGAC  AGTTTAACCG CAAGCAAAGT AACAGCAAAC AACAATATAC CGGCTCCTTC ATCCAATGTT GCAACACTCA TCTCCAAGTT TCAGAATGTA GGCCTCACAG ATGAAGATAT GGTGACACTC  TCAGGTGCAC ATACAATAGG GAAAGCACGC TGCTCCACAT TCAACAACAG ACTTCTGAAC CAGGCGGGTA CAGGATCACC TGATCCCACT CTTCAAAAAG AGTTTCTGAC ATCATTGCAA  CAACTCTGTT TGGAAAGAGT GAATAATAAC AACACTGTAA CTGTTCTAGA CTTGGAGACT CCACTCACCT TTGACAACCA ATATTACCAA AACTTGGCTT CTGGTGAAGG CCTTCTGAAT  TCCGATCAGG TGCTCTTCTC CAGTGGAGGA AACACGAAGC AGTTGGTGGA ATACTACATT CAAAACCAAG AAGCTTTTTT CGACAACTTC AAAACATCAA TGATCAGAAT GGGAAACATT  CAGCCTCTCA CAGGTACCGA TGGAGAGATT CGTCGCAATT GCCGTTTTAT TAATTAATTC TGTTGTTGTG GTGCATCAAC ATGCTCATGA TGCATTCACC AAATAAGCCT TCTATATATA 
TATATATATA ATCACAACTG ATTGTGTGGC TTTGATAGTA TGCATGTATT GTTTTCCTAG T 

Retrieve as FASTA