View Redoxidase 13207

Entry information : SpolAPx02 (Spipo0G0091000)

Entry ID	13207
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-17 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2015-06-17 (Christophe Dunand)

Peroxidase information: SpolAPx02 (Spipo0G0091000)

Name (synonym)

SpolAPx02 (Spipo0G0091000)

Class

Ascorbate peroxidase [Orthogroup: APx2002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolAPx02 start..stop	S start..stop
PnodAPx06	647	0	85..435	83..433
PotacuAPx06	644	0	31..435	24..432
PnodAPx03	643	0	63..435	64..436
VvAPx06	640	0	59..435	42..424

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13207' 'join(6722382..6722600,6722722..6722859,6723382..6723502,6723572..6723672,6723751..6723838,6724084..6724151,6724250..6724336,6724561..6724635,6724725..6724802,6724934..6725038,6725147..6725221,6725366..6725518)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	6722382..6722600	217	N° 2	6722722..6722859	136	N° 3	6723382..6723502	119	N° 4	6723572..6723672	99
N° 5	6723751..6723838	86	N° 6	6724084..6724151	66	N° 7	6724250..6724336	85	N° 8	6724561..6724635	73
N° 9	6724725..6724802	76	N° 10	6724934..6725038	103	N° 11	6725147..6725221	73	N° 12	6725366..6725518	151
join(6722382..6722600,6722722..6722859,6723382..6723502,6723572..6723672,6723751 ..6723838,6724084..6724151,6724250..6724336,6724561..6724635,6724725..6724802,67 24934..6725038,6725147..6725221,6725366..6725518)

Literature and cross-references SpolAPx02 (Spipo0G0091000)

Protein sequence: SpolAPx02 (Spipo0G0091000)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	435
PWM (Da):	46729.93	Transmb domain:	o415-434i
PI (pH):	8.67

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MAAILPSPASISGLGASLAGPSAAAAGGAVSSRRAVTLSSLLLSPRCSALPSSSRRISLKGSPFSPLRLHSQKNARGGAVRKSSGAASATSFASDPGQLKSAREDIKELLRTKFCHPIMI
RLGWHDSGTYDKNIEEWPKRGGADGSLRFEPELRHGANAGLINALNLLQPIKDKYPGVTYADLFQLASATAIEAGGPKIPMKYGRVDVTDPEQCPEEGKLPDAGPPSPASHLRQVFYRMG
LGDEIVALSGAHTLGRSRPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKEKKDEDLLVLPTDAALFDDPSFKVYAEKYAEDQEAFFKDYAEAHAKLSDLGAKFDPPEGF
SIDDDPKEAKPEKFVAAKYSSGNRELSNSMKQKIRAEYEAIGGSPDKPLQSNYFLNIMIFIAGLALLTSLLGN*

Retrieve as FASTA

Remarks

Complete sequence from genomic (11 introns). Incorrect prediction from Phytozome (missing first exon, extra exon).

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

GCATCATCGT ATGTCTGTGC TGGCGATGCA TCATCAGGAC CTTGTCCGGT ACCGACGTTT CCCTTCGGAG GAGCTTCTTC ATGAAAATCT GCTGTCTGAT CGTCACCCAT TTTTTGGTCC GTAGAAGTCT CGGAACTTCT CTCACCCCAA GAATCGTTAT TATTGGTGGC ACCTTCAGCT TTCGTTTCAC CTTCTGGCAC AACGCCAGAA CTATCCTCGA ATGGCATATC GGTCTGAACT TGGCTTTTAG CATCAGATTT GGTCTCAGAA ATAGATATAT CGACTGGAAC CACTGCTGAC GATGTCATCA TCCAGATCCC AACCAGGCAA AGACCAACAA ACAAAACGAG GGTCGCTGTT GAACAGTAGG AGGAAGAAGA AGGCCTCCTA CCCTCCGTAC GGGGGTTTCT TCCTAGCGCC ATCTTTCTGT ATTCAGTGTC CCCCCAAAAC AGTACAGACA GCTGCAAAAG AGGAATTGGA AATAACATAT GCATTCAATA AATCCGTTCT ACAAGATAAA CGAGATCCCC GTGCAAAAAC AGGAGAGAGA ATTTTTTTAT AGAAAAATGT CGAGCTGCAA TCATCAAGGA ATCACAAGCT GGAGGTCGAA ACTGAGAAAG TCAATTACTC TCCAAATTTC TCCAGACAGA CGGTACAAAA TAAAGGAAAA TGCACGATAA AAATAGGAAA ATAGAAAGGC AAGACAAACC TAAAAACTTC AGAGACGTGA GAGGGAGAAA CACACTGCAC AACCGATCAC ACCGGCATCA TGTCACACCT CAACGCGGCT GTCACAACAA AAGCACGAAA TACGGCACAG ATATACACAA TGCAGCTCAG CAAGCGACAC CATTTGCTCC CAAAAACGCG TCATAAGGCA AATATATGGA CAATGCAGCT CCGGAGGCGA CACCATATGC TTCCAAAAGC ACCATGTCAG GGATGGACCG CCACAGAAGA TCAGGAAACA AACTTCAATA AGCCTCAATC AGTCACCGGA TGAGATACGA CAATGGCGCG ACACAGCGCC ACAATGCAGC GCCACAACGA GAAAAACCAC CCGACATTAA ACGAAAGCGC GTAACAAGGC AAAGACATAC GCAATGCAGC TCAGCAAGCG ACACCATCTG CTCCCGAAAG CACCGTACCA GGGACGGACC GGGACAGAAG ATCACGAATC AAACCTCAAC ACCCCTCGAT CAGTCACCGG ATGAGACACA GCAATGGCGA CGAGAAAAAC CACCAAACAT TCAGACCTAA AGCAGATTCC CCCCCGTACC TTGCTTCAGC TTCAAGCTCC CCGCCGCGCG AGCTCCCTCC TCCTCCTACC GCCACCACCC GAGATGAGAT CGACGAGATG ATCCAAGATC GAGGAATCGC GAATCCGAGG ATCGCAATTC CACCTCTTTA TTGCAGGAAC AGGCGCCACC TCGCCGCCCC TCCGACGGTG GCAATCACTC CGCCGGCCGC GATTTCCTGA GAGCGGAGGA GGAGAGCCTG TAATGGCTGT TCATCCACAA GAGCCCCCGC TTTTGTAGGC CATCTTCCCC TGTCCCTCGC CCACACCCTA ATCAGCACCC ACGGAGGCTT CGCCACGTAA GAGACCCCCG GGTTATCTTT GTTTTTATTC ATGGTCGTAC GGTAGGGTAA ACAGTTCCTA AGGAACACCA ATTTGCGTCC TCGCGGGGAG CAGAGCTCAC GATACGGACG GACCGGGGTC TCCGCGGGCT GTCCGAGCCG GCCCCACGGA AAGATTCGGC CCAGCCCGAA AACGTAGGGC CCGGCCACGT GTGCTGACAG AGCAACAAAA GATCGTGGTC CACGTCAGAC AGAAAAGCCC GCCCGATAGA GCGACATGTC AACGGTTATC TGATACGTGT CTATTTGCTA TTCGTTTATC AAGGATTGGT CTCACGGCGA
GGAACAATAG CCGTTGACGG CGCTTTTTAA GGCCCAGGAC AGAGAGCGCG ATCTTATGAG CAGGAGTCTC AGATCGAACC

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGCGGCGATTCTGCCCTCACCGGCCTCCATCTCCGGCCTCGGGGCCTCCCTGGCCGGGCCCTCCGCCGCCGCAGCCGGCGGCGCCGTTTCGTCGAGGAGGGCGGTGACGTTGTCGTCC
CTTCTTCTGTCGCCGCGATGCTCCGCCCTCCCCTCTTCCTCTCGCCGCATCTCACTCAAGGGATCTCCATTTTCCCCTCTCCGCCTCCACTCCCAGAAGAGGTAATTTCGCTCGCTTTTC
ATTGCTTTGATGCGACTGATTACGGGCTGTGTGCGTGGTGGATGGGAAGTTTCCTCGATTGCCTGCGAAATTTTGAGCTCAGATGGGGTTTTCCGTTCGTAGAATGCGCGCGGCGGGGCG
GTGCGCAAGTCGTCGGGGGCCGCCTCCGCCACGTCCTTCGCGTCGGATCCTGGCCAGTTGAAGAGCGCGAGAGAGGACATCAAGGAGCTCCTCAGGACGAAATTCTGCCATCCCATCATG
TGGTAGCCCCCCTCAAATCCGTGCACCTCCAAAGACGGCTTCGTCTAGGGTTTCCCCTCTCCGTTTTTTCACCGAGTTGTGTATTTCAATCGTTTGCTTGGTCGTGATAGATTTCAAATG
TTTTCTCCTCTTTGACTTATCGCGATGGACCAACGATTCTTCCAAATGTTAGTGCGAATATTATGAATTTGAATGAAACCCTATTTAATGGCTAACCACGAAGAGAAATCTGGACAAGAC
GTAGAAAAACAGTGAAACAATGTTTCTTGATCTTATGCGGGAAGAACATCGTCTGAGCGTGTTGTCTGCGGCTATTATACTGCATTCGGTAGTTTTCCTCGGCAAAATTATGATCCGGTT
TATACATGAACGGAGCATACGGTCCTTCATGCTGGTTCTTCGTATGATATTTTCTTTGATAGTTCGAACGAAATTTAGATCGTAGACAATTTTCCATTAGAATACACTGCAGGTGATTTG
ATTGTTTTCGATTGAGTAACTCTGGCTCTTCATCTTCGCATTAGATTCGGCTTGGATGGCACGATTCTGGAACCTACGACAAGAACATTGAAGAGTGGCCCAAAAGAGGCGGAGCAGATG
GAAGCCTGAGATTCGAGCCAGAGCTGAGGCATGGAGCTAACGCCGCGGTACCTTTCCTGCCCCAATCCCACTCCAACCTGCCGACTAAGTTTCCATGTACTGACGAGGTGCCGCAGGTCT
CATAAACGCCTTAAATCTTCTTCAGCCTATCAAGGATAAGTACCCTGGAGTTACATACGCAGACCTGTTCCAATTAGCCAGCGCCACAGCGATCGAGAGGTTCTTGTTCAATCATATTTA
CTTTATCTACGAATTGGCGCAGAAGACATTGATAACTGATGTGAAATTAGATTTTAGGAAGCCGGCGGCCCGAAAATCCCCATGAAATATGGTCGCGTGGATGTCACTGACCCCGAGCAG
TGCCCTGAAGAGGGGAAGCTTCCTGTGGTGAGAAATATCATACGCCTCTGCAACAAGTATTTTAGGATCTCCTTCCATGTTATTTCTCTGAATTCTTGACCCTCATCTCAACTGGAAACA
TTGCTCCATCCCTTTATTTTTTATTTTAAAAATTATTTTTTTGGGTACGATCTTCTTTGTCACCATATAATTGTGATCTCAGTTTCGGACTTTCAGAGAATTCCTTGCGTAATTCCCTGC
ATTAAGGGTTTATAGTCTTCTGAATTTCGTAGATGCTGGCCCACCTTCTCCAGCCTCCCATTTACGGCAAGTGTTCTACAGGATGGGCCTCGGTGACAAGAGGTCAGCACCCGCAGCACA
GTCCATATTTATTCATCACACGGACGTCTGATTCTTCATGACGAGCTTATAATTTCGGGGTCACCTGTCGGTCCTTGCAGGAAATAGTCGCATTGTCCGGTGCCCATACTCTGGGAAGAT
CAAGACCCGAACGCAGTGGGTGGGGCAAGCCAGAGACCAAGTATACACAGTAAGGATAAATCCCATCTCCAAGATTTGTTTCCATTCTTATTTTTATTTCTATTTTTATTTTATTTCGTG
GCGTTGATCTCCTCATCCAATAGCATAAATAAAAACACTGTGGATTGCTGGTGTGCGTTGACCGTCCCCCTCTTCATTTCTCTTCCATTGAAGCCCCCCCCCTCATCCTTCATCTGGTGT
AGTTATGCGGTCAAACTCTGTGATTCTTGACAGAAAGATGGGCCGGGCGCCCCCGGAGGTCAATCGTGGACTGTGCAGTGGTTGAAGTTTGACAACAGCTACTTCAAGAGGTGGGGAATC
TTTTTATCTGGCCTCTGAATGATTTATTTATTTATGTATTATTATTATTATTATTTTTTCTTCCAAACTTGTCATTCAGGATATCAAAGAGAAGAAGGACGAAGATCTGCTGGTGCTGCC
CACCGACGCTGCTCTATTTGACGACCCATCCTTCAAGAGGTAACCGAGATTCTTGGACTGCATATAGATTAAGAAAAATAAAAAAACTCATAAAAAGATAAAGAAATTCAGAAAAAAAAA
ATTAAGAAAAAGAAAACGAATTAAGAAAAAAAAATGGTCTTCTTCTTCAGGTGTATGCTGAGAAGTATGCCGAAGATCAGGAGGCATTCTTCAAGGATTATGCAGAGGCCCACGCAAAGC
TCAGCGATCTTGGCGCAAAATTCGATCCTCCCGAGAGGTGCGTTCTCCGAAAATATGAAAAATATTCCTCCTGAGAGCGGGAAATTTTCTGTAATTCGCGTCTCCCTTCCCTAAAATAAT
CCCAATTATGGAAATTATTCGGCAGGGTTTCTCCATAGATGACGATCCCAAGGAAGCCAAGCCGGAGAAGTTCGTCGCCGCCAAGTACTCCTCCGGAAATATGTCAGTCATACCCTCATT
TTTATCCCCTGACTCTGGTTAAATAATTTACAGATGCATATATAATTTATAAATATTTAATATGGTAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGAGGATCTAATATGATGCTCTGAA
TGGCAGAGGGAGCTGTCGAACTCGATGAAGCAGAAGATTCGGGCAGAGTACGAGGCGATCGGGGGGAGCCCTGACAAGCCGCTCCAGTCAAACTACTTCCTCAACATCATGATCTTCATC
GCCGGATTGGCCCTGTTGACTTCTCTTCTTGGGAACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA