Sequence Properties
first value : protein second value (mature protein)
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Length (aa): |
320 (294) |
PWM (Da): |
34389.25 (31653.8) |
Transmb domain: |
i7-29o |
PI (pH):
| 9.44 (9.67) |
Peptide Signal:
| cut: 27 range:27-320 |
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Sequence 0
Send to BLAST
Send to Peroxiscan
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
MAATHSALSL ASSLLVLLLF VCTAHAQLRP NFYSSTCPNL NRIVQKTMRT AVKNDPTLAA SMIRLFFHDC FVNGCDASVL LADTAFFTGE QNAFPNRNSI RGMDVVERIK SAVEASCNAT
VSCADILALA TRDGVVLSGG PSWAVPLGRR DARTASQSAA NSNLPGPSSS LSALVSSFAN QGLSLRDLVA LSGAHTFGVA RCATFRNRIY NDANIEPIFA RSTQANCPRS GRDTNPSPLD
VGTPRAFDNA YYRNLMSRRG LLHSDQELFN NGSADSIVRR YVASSSIFFR DFAAAMVRMG NISPLTGSNG EIRRVCSRVN *
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Retrieve as FASTA
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Remarks |
Complete sequence from genomic (introns 1 and 2). Incorrect prediction from Phytozome (PS is missing du to frame shift). |
Promoter►
Send to BLAST
Send to cis Analysis
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DNA ►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCCGCCA CTCACAGCGC GTTGTCTCTT GCCTCATCCC TCCTCGTCCT CCTCCTGTTC GTGTGCACCG CACACGCGCA GCTGAGGCCG AACTTCTACT CGTCCACCTG CCCTAACCTG
AACAGAATCG TCCAAAAAAC CATGCGAACT GCCGTCAAGA ACGAnCCGAC GCTTGCCGCC TCCATGATTC GCCTCTTCTT CCACGACTGC TTTGTCAACG TAAGTGCACG TACTAGAGAA
TAAACTTTTC ACAAGACGGA CGGCCGGTCG TCTCGCCTCG CCGCCGCGAC GGTTCTAATC CCGACTTGTG TGATCATGCA GGGCTGCGAC GCATCGGTGC TCCTGGCTGA CACCGCGTTC
TTCACTGGCG AACAGAACGC CTTTCCGAAC CGAAACTCCA TTCGAGGCAT GGACGTCGTC GAGAGGATCA AGTCCGCCGT CGAGGCATCG TGCAACGCCA CGGTGTCGTG CGCCGACATC
CTGGCTCTCG CCACCAGGGA CGGCGTCGTC TTGGTGACTG TCCCAAAATC CTCCCCTCAG GCCGTTTAGC CTCTGTCGAA CGAGCCCCCT CTCTAACCGC AGGAGACTGA CTGCCTTTTT
CCATTCAGAG CGGAGGACCC TCATGGGCGG TGCCCCTCGG ACGGAGGGAC GCGAGGACGG CGAGCCAGAG CGCAGCTAAC AGCAACCTCC CGGGCCCTTC GTCCAGCCTC TCCGCCCTCG
TCTCCAGCTT CGCCAATCAG GGCCTTAGTC TGCGGGACCT GGTGGCCCTC TCCGGCGCGC ACACCTTCGG CGTCGCCCGA TGCGCTACCT TCCGCAACCG CATTTACAAC GACGCCAACA
TCGAACCCAT CTTCGCCCGC TCAACCCAGG CCAACTGCCC GCGGTCCGGC CGAGACACCA ACCCCTCCCC GCTAGACGTC GGTACCCCCA GGGCCTTTGA CAACGCCTAC TACCGCAACC
TCATGTCCCG GCGTGGTCTC CTGCACTCCG ACCAGGAGCT ATTCAACAAC GGCTCCGCAG ACTCCATCGT CCGCCGCTAC GTGGCCAGCA GCTCGATCTT CTTTAGAGAT TTCGCGGCGG
CGATGGTGAG GATGGGAAAC ATCAGCCCCC TCACCGGTTC CAACGGGGAG ATCAGGCGGG TCTGCAGTAG GGTGAACTGA
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Retrieve as FASTA
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CDS►
Send to BLAST
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2 |
ATGGCCGCCA CTCACAGCGC GTTGTCTCTT GCCTCATCCC TCCTCGTCCT CCTCCTGTTC GTGTGCACCG CACACGCGCA GCTGAGGCCG AACTTCTACT CGTCCACCTG CCCTAACCTG
AACAGAATCG TCCAAAAAAC CATGCGAACT GCCGTCAAGA ACGAnCCGAC GCTTGCCGCC TCCATGATTC GCCTCTTCTT CCACGACTGC TTTGTCAACG GCTGCGACGC ATCGGTGCTC
CTGGCTGACA CCGCGTTCTT CACTGGCGAA CAGAACGCCT TTCCGAACCG AAACTCCATT CGAGGCATGG ACGTCGTCGA GAGGATCAAG TCCGCCGTCG AGGCATCGTG CAACGCCACG
GTGTCGTGCG CCGACATCCT GGCTCTCGCC ACCAGGGACG GCGTCGTCTT GAGCGGAGGA CCCTCATGGG CGGTGCCCCT CGGACGGAGG GACGCGAGGA CGGCGAGCCA GAGCGCAGCT
AACAGCAACC TCCCGGGCCC TTCGTCCAGC CTCTCCGCCC TCGTCTCCAG CTTCGCCAAT CAGGGCCTTA GTCTGCGGGA CCTGGTGGCC CTCTCCGGCG CGCACACCTT CGGCGTCGCC
CGATGCGCTA CCTTCCGCAA CCGCATTTAC AACGACGCCA ACATCGAACC CATCTTCGCC CGCTCAACCC AGGCCAACTG CCCGCGGTCC GGCCGAGACA CCAACCCCTC CCCGCTAGAC
GTCGGTACCC CCAGGGCCTT TGACAACGCC TACTACCGCA ACCTCATGTC CCGGCGTGGT CTCCTGCACT CCGACCAGGA GCTATTCAAC AACGGCTCCG CAGACTCCAT CGTCCGCCGC
TACGTGGCCA GCAGCTCGAT CTTCTTTAGA GATTTCGCGG CGGCGATGGT GAGGATGGGA AACATCAGCC CCCTCACCGG TTCCAACGGG GAGATCAGGC GGGTCTGCAG TAGGGTGAAC
TGA
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Retrieve as FASTA
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