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Entry information : SpolPrx16 ( Spipo12G0009400)
Entry ID 13216
Creation 2015-06-09 (Christophe Dunand)
Last sequence changes 2016-02-26 (Catherine Mathe)
Sequence status complete
Reviewer Christophe Dunand
Last annotation changes 2016-02-27 (Christophe Dunand)
Peroxidase information: SpolPrx16 ( Spipo12G0009400)
Name (synonym) SpolPrx16 ( Spipo12G0009400)
Class Class III peroxidase    [Orthogroup: Prx002]
Taxonomy Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela
Organism Spirodela polyrhiza (great duckweed)    [TaxId: 29656 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value SpolPrx16
start..stop		 S start..stop
LminPrx53 518 0 28..331 16..330
CescPrx37 506 0 1..329 3..334
SpolPrx25 476 1.04e-170 28..329 22..327
LminPrx01 472 2.72e-169 28..329 21..325
Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13216' 'join(934937..935932)' Exons►
ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize ExonStart..EndSize
N° 1 934937..935932 994  
join(934937..935932)


exon

Literature and cross-references SpolPrx16 ( Spipo12G0009400)
DNA ref. Phytozome 12:   pseudo12 (935932..934937)
Cluster/Prediction ref. Phytozome Gene 12:   31502844
Protein sequence: SpolPrx16 ( Spipo12G0009400)
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   331 (302)
PWM (Da):   %s   35836.2 (32844.5)  
PI (pH):   %s   8.21 (8.21) Peptide Signal:   %s   cut: 30 range:30-331
Sequence
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MGVRTTFRPL AEAAAVLLLL AAAVTVAEGR LTVDYYARTC PKAADIVAET VLNKQIASPT TAAGTLRLFF HDCFLDGCDA SVLVSSNAFN RAERDADINL SLPGDAFDAV VRAKTALELA  CPGIVSCSDI LALAARDLLS MLGGPFYAVR LGRKDSFVSR ADAVEGHLPH SNSSVSQLIA LFAERGFSPR DLVALSGAHT VGFSHCKEFA GRFGPQPDPA ADPQFAESMS RACAGYANRP 
TIAVFNDVMT PNKFDNMYFR NLQRGMGLLA TDQALAADRR TRRYVRLYAA NQTAFFQDFV HAMEKLSVYG VKTGRKGEVR RRCDEFNSLL V* 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no intron).
Promoter►
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Send to cis Analysis
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CATCATTATT CTCACTGGAT GAATCATGTG GGTCCTCTAT CGAAAGGACG ACTGTTCTTC CGGATTGTTT TCTACATTTT CAGAGATCTT GCTTAGTAAA ATCTCACCAG AGTGAACCTC  TCAAGCATTT ATGTAATGGA TTCACTTTGA TTCACGGAAA ATATTTCATA TCTAGGGACC AACCGATCGA TTTTTTACTC CTCGACTTGT GCGGTCCCTT CACCTGTAAC TTAAAATTTA  TCTAAAAGTT TTCTTTGTTG TATACAGCAA GAGACTCCAC TAAACTCATA TGCATCTGGG GAACAGTACA AAACAGGCAT GGCTATACCA GGCTATACCA TTCAAAGATG GGAATTTCTC  CATTTGTTCA TTGGGAAGAT CCTCCATCTC CTTTGCATCA TGTGGACCAC CTGAAATCAC CTCCCACGCA TTACAATCAG TGGAGCCATG TGAGAGAAAA TTCTCGGTAG TTGACTTCTT  TGGTAGTTGA AGAACTCCTT TCCGATCAAT AGTTCCTCGT TACAAGTTAT TCTGACGTTG TTCGGCAGGA CTGCTGCGAG GAAGACAGAA GCTTTGGCCA GAAGTACAAG ATGACGAGGT  TAGAGTTTGA CCCATCAAGT CAAATATGGC AGTAATTTTC TCTTTCTTTA ATGTCAAACT TACCATAAGG TGAATATATC TTTAATCGTG TGAATCTCTT GAAAAATCTT GGGTCAGCTC  CTCGAGCGAA GAACAGAATT TTTACGCGTG CCCAGCCAAA TGCTCCCTGA GCTTGGTCAA AAGCTTCAAC CAGGTCAAAC GTTAGAAGAA CAAAGCACAT TTATTCAAAG ACGAGGCAAA  TTTCATAATA ACTTAACTCC GATGATAGGA AATATCATGT GAAAAACGCA TGAAAAAGCC TCACGAATCT GGAAATAAAA CCCCTATCAG TCTGAATTGA GAGCGAGAGA GAGAGGGAGA  GATAAAAGAG CTCCATTTTC TGTGAATCGA TCCGTAAGGT TTTGAGAGAT CAAGAAACGC CCGAGCATTT GAAGGCTCCG AGCGGTAGGT AGGAGCTTAA CATCCGTCGC AGACTAATCC  CGGTCAATAA GGGTGGATAC AAAGCCCAAG ATGCACTGGT ACCAGCCCAA ATCCTGAATG GTGCAGGCCC GTTTACTCTG TCGAAAAGTC AGCCCATTCT GGGCTCTGAT TGAGGCGAAC  CGACAAGGAC AGTAGCGTTA GCGGACCAAG ACGAACCGGG TGGATGCCTT CGGATAAATA TCTATTTGAA AATGACGTAC GCACGTACGT GCATTGCATG GGACAAATAC AGGGGCGATC  ATCCCTTCCC CTTCTTCTCG CCCTACAACC CCTCTCCGCC GCAGCCTCTC TCTCTCTCTC TCTCCTCCCC nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn  nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nCGAGAGAGA  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGGGAGAGA TAAGAGAGGT TGGGGGGAGG TTGTGAACAG AGACAAAGGA ATGGGGGTGC GCACCACGTT CCGCCCCTTG GCGGAGGCGG  CGGCGGTGCT GCTGCTCCTG GCGGCAGCGG TAACAGTGGC GGAGGGGAGG CTGACGGTGG ACTACTACGC GCGGACGTGC CCGAAGGCGG CGGACATCGT GGCGGAGACG GTGTTGAACA  AGCAGATCGC CAGCCCGACG ACGGCGGCGG GCACCCTCCG GCTCTTCTTC CACGACTGCT TCCTAGACGG GTGCGACGCC TCCGTCCTCG TCTCCTCCAA CGCCTTCAAC CGCGCCGAGC  GCGACGCCGA CATCAACCTC TCCCTCCCCG GCGACGCCTT CGACGCCGTG GTACGGGCGA AGACGGCCCT CGAGCTGGCC TGCCCGGGAA TCGTCTCCTG CTCCGATATT CTCGCCCTCG  CCGCCCGCGA CCTGCTCTCC ATGCTGGGCG GGCCTTTCTA CGCCGTCCGC CTCGGTCGCA AGGACAGCTT CGTCTCCCGT GCCGACGCCG TCGAGGGCCA CCTCCCCCAC TCCAACAGCT  CCGTCTCCCA GCTGATCGCC CTCTTCGCGG AGAGGGGCTT CTCCCCCAGG GACCTCGTGG CCCTCTCCGG CGCCCACACC GTCGGCTTCT CCCACTGCAA GGAGTTCGCC GGCCGGTTTG  GCCCGCAGCC CGATCCCGCC GCCGACCCCC AGTTCGCGGA GAGCATGAGT AGGGCCTGCG CCGGCTACGC CAACCGCCCG ACCATCGCCG TCTTCAACGA CGTGATGACG CCGAACAAGT  TCGACAACAT GTACTTCAGG AATCTCCAGC GGGGGATGGG CCTCCTCGCC ACCGACCAAG CCCTGGCCGC GGACCGGCGC ACCCGCCGCT ACGTCCGGCT CTACGCCGCC AACCAAACCG 
CCTTCTTCCA GGACTTTGTC CACGCCATGG AGAAGCTGAG CGTCTACGGC GTCAAGACCG GCCGCAAGGG CGAGGTCCGC CGTCGCTGCG ACGAGTTCAA C 

Retrieve as FASTA  
DNA ►
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ATGGGGGTGC GCACCACGTT CCGCCCCTTG GCGGAGGCGG CGGCGGTGCT GCTGCTCCTG GCGGCAGCGG TAACAGTGGC GGAGGGGAGG CTGACGGTGG ACTACTACGC GCGGACGTGC  CCGAAGGCGG CGGACATCGT GGCGGAGACG GTGTTGAACA AGCAGATCGC CAGCCCGACG ACGGCGGCGG GCACCCTCCG GCTCTTCTTC CACGACTGCT TCCTAGACGG GTGCGACGCC  TCCGTCCTCG TCTCCTCCAA CGCCTTCAAC CGCGCCGAGC GCGACGCCGA CATCAACCTC TCCCTCCCCG GCGACGCCTT CGACGCCGTG GTACGGGCGA AGACGGCCCT CGAGCTGGCC  TGCCCGGGAA TCGTCTCCTG CTCCGATATT CTCGCCCTCG CCGCCCGCGA CCTGCTCTCC ATGCTGGGCG GGCCTTTCTA CGCCGTCCGC CTCGGTCGCA AGGACAGCTT CGTCTCCCGT  GCCGACGCCG TCGAGGGCCA CCTCCCCCAC TCCAACAGCT CCGTCTCCCA GCTGATCGCC CTCTTCGCGG AGAGGGGCTT CTCCCCCAGG GACCTCGTGG CCCTCTCCGG CGCCCACACC  GTCGGCTTCT CCCACTGCAA GGAGTTCGCC GGCCGGTTTG GCCCGCAGCC CGATCCCGCC GCCGACCCCC AGTTCGCGGA GAGCATGAGT AGGGCCTGCG CCGGCTACGC CAACCGCCCG  ACCATCGCCG TCTTCAACGA CGTGATGACG CCGAACAAGT TCGACAACAT GTACTTCAGG AATCTCCAGC GGGGGATGGG CCTCCTCGCC ACCGACCAAG CCCTGGCCGC GGACCGGCGC  ACCCGCCGCT ACGTCCGGCT CTACGCCGCC AACCAAACCG CCTTCTTCCA GGACTTTGTC CACGCCATGG AGAAGCTGAG CGTCTACGGC GTCAAGACCG GCCGCAAGGG CGAGGTCCGC 
CGTCGCTGCG ACGAGTTCAA CTCCCTCCTC GTCTGA 

Retrieve as FASTA  
CDS►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGGGGTGC GCACCACGTT CCGCCCCTTG GCGGAGGCGG CGGCGGTGCT GCTGCTCCTG GCGGCAGCGG TAACAGTGGC GGAGGGGAGG CTGACGGTGG ACTACTACGC GCGGACGTGC  CCGAAGGCGG CGGACATCGT GGCGGAGACG GTGTTGAACA AGCAGATCGC CAGCCCGACG ACGGCGGCGG GCACCCTCCG GCTCTTCTTC CACGACTGCT TCCTAGACGG GTGCGACGCC  TCCGTCCTCG TCTCCTCCAA CGCCTTCAAC CGCGCCGAGC GCGACGCCGA CATCAACCTC TCCCTCCCCG GCGACGCCTT CGACGCCGTG GTACGGGCGA AGACGGCCCT CGAGCTGGCC  TGCCCGGGAA TCGTCTCCTG CTCCGATATT CTCGCCCTCG CCGCCCGCGA CCTGCTCTCC ATGCTGGGCG GGCCTTTCTA CGCCGTCCGC CTCGGTCGCA AGGACAGCTT CGTCTCCCGT  GCCGACGCCG TCGAGGGCCA CCTCCCCCAC TCCAACAGCT CCGTCTCCCA GCTGATCGCC CTCTTCGCGG AGAGGGGCTT CTCCCCCAGG GACCTCGTGG CCCTCTCCGG CGCCCACACC  GTCGGCTTCT CCCACTGCAA GGAGTTCGCC GGCCGGTTTG GCCCGCAGCC CGATCCCGCC GCCGACCCCC AGTTCGCGGA GAGCATGAGT AGGGCCTGCG CCGGCTACGC CAACCGCCCG  ACCATCGCCG TCTTCAACGA CGTGATGACG CCGAACAAGT TCGACAACAT GTACTTCAGG AATCTCCAGC GGGGGATGGG CCTCCTCGCC ACCGACCAAG CCCTGGCCGC GGACCGGCGC  ACCCGCCGCT ACGTCCGGCT CTACGCCGCC AACCAAACCG CCTTCTTCCA GGACTTTGTC CACGCCATGG AGAAGCTGAG CGTCTACGGC GTCAAGACCG GCCGCAAGGG CGAGGTCCGC 
CGTCGCTGCG ACGAGTTCAA CTCCCTCCTC GTCTGA 

Retrieve as FASTA