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Entry information : GbPrx06
Entry ID 1322
Creation 2007-03-23 (Christophe Dunand)
Last sequence changes 2015-02-13 (Christophe Dunand)
Sequence status complete
Reviewer Not yet reviewed
Last annotation changes 2020-12-01 (Christophe Dunand)
Peroxidase information: GbPrx06
Name GbPrx06
Class Class III peroxidase    [Orthogroup: Prx187]
Taxonomy Eukaryota Viridiplantae Streptophyta Ginkgoopsida Ginkgoaceae Ginkgo
Organism Ginkgo biloba    [TaxId: 3311 ]
Cellular localisation N/D
Tissue type N/D
Inducer N/D
Repressor N/D
Best BLASTp hits
Perox score E-value GbPrx06
start..stop		 S start..stop
GbPrx54 521 0 9..339 8..337
GbPrx12 487 6.22e-175 15..339 13..334
GbPrx42 456 1.08e-162 12..339 10..338
PtaPrx60 438 2.59e-155 21..339 21..346
Literature and cross-references GbPrx06
Literature Brenner,E.D., Twigg,R.W., Runko,S.J., Katari,M.S., Dedhia,N.N., O'Shaughnessy,A.L., Balija,V., Martienssen,R.A., McCombie,R.W., Benfey,P., Coruzzi,G. and Stevenson,D. Expressed tag sequences from Ginkgo microsporophyll
EST ref. GenBank:   DR064878
Protein sequence: GbPrx06
Sequence Properties
first value : protein
second value (mature protein)
Length (aa):   %s   339 (307)
PWM (Da):   %s   37054.72 (33704.8) Transmb domain:   %s   o5-27i
PI (pH):   %s   8.03 (7.76) Peptide Signal:   %s   cut: 33 range:33-339
Sequence
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*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
MAASFHPFHG TVNVIISHLV ILLALLIRGS AAYDNDLSPY FYEHSCPHAL SIVKSVVKKA VEKEARMAAS LLRLHFHDCF VHGCDASVLL DDTPSFRGEK TANPNKNSLR GFDVVDDIKS  QLESACPGIV SCADIVAIAA RDSVALRGGP EWSVPLGRRD SRWASFSGAN QNIPAPNSTL QTLTTKFELQ GLNEEDLVAL SGGHTIGQAR CISFRQRVYG RSGNQKPDLA IDESYSTQLK 
SSCPRSGGDN NLSPLDVVSP TKFDNQYFKN VENLKGLLVT DAELYSNHMN PEMAKIVSVY AANKDLFFKQ FAESMVKMSS IKLLTGSKGE IRHNCRRMN 

Retrieve as FASTA  
Remarks Complete sequence from genomic (no prediction from SymDB, scaffold259) and RNA seq (gba_locus_680_iso_1_len_1335_ver_2). No EST available.
DNA ►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTGCCA GTTTTCATCC CTTTCACGGC ACAGTAAATG TTATTATATC ACACCTGGTT ATTCTTCTTG CACTGTTGAT TCGGGGCAGT GCTGCGTATG ACAATGACTT GAGCCCGTAT  TTCTACGAAC ATTCTTGCCC GCATGCTCTA TCCATTGTAA AGTCCGTGGT AAAAAAGGCC GTGGAAAAGG AGGCTCGAAT GGCAGCATCT TTACTTCGTC TTCATTTTCA CGATTGCTTT  GTTCACGTAC ATGTTCTTTT TTTTTTTTTT TACCTCTACT GCATTCTGCA TTATTGTTAT TGTTATTTGC ATTATTGTTA TTTTGTTATT GTTGCTGCAA TCCGTATTCT CGTGTTCGCT  AAATTCTTCA AGGAACGTCT GCTAACAATT ATGAGTTATA TTGACAGGGC TGCGATGCTT CCGTGTTGTT AGACGACACG CCTTCATTCA GAGGAGAGAA GACGGCAAAT CCCAATAAGA  ATTCGTTAAG AGGATTTGAC GTGGTGGACG ACATCAAAAG CCAATTGGAG AGTGCATGCC CCGGAATTGT GTCGTGTGCT GACATCGTTG CCATTGCTGC CCGTGATTCT GTAGCGTTGG  TACTAATTAT TATAAATTTA TTTATTTTTT CTATTGCTGA AAATATTTGA TAATCGAAAC TTCTTTAAGC TCGTCAATGT TCGTTAACGT CGGTGTTTGT CAGAGAGGAG GTCCAGAGTG  GAGTGTCCCG TTGGGAAGAA GAGACTCGAG ATGGGCAAGT TTCAGCGGAG CGAATCAGAA CATTCCGGCG CCAAATTCCA CTCTGCAGAC TCTCACCACA AAATTCGAAC TTCAAGGCCT  TAACGAAGAA GACTTGGTTG CACTCTCCGG TAACATTTTT TCATTCTGTA CTACTGATCG TAATCATTTT ATCATCATGT TAAAATTGCA ACGAGATTAA TTCCTTCTTT TATCGATAAA  TAATGACAAT TGCAGGCGGC CACACCATCG GCCAGGCGCG GTGCATAAGC TTCAGGCAGA GAGTGTACGG TCGGAGTGGA AATCAAAAAC CTGATTTAGC CATCGATGAG AGCTATTCAA  CACAACTGAA ATCAAGCTGT CCGAGATCGG GTGGAGATAA CAACTTATCG CCTTTAGATG TTGTCAGCCC AACTAAATTT GACAACCAAT ACTTCAAAAA CGTGGAGAAT TTGAAGGGAC  TTTTGGTTAC TGATGCGGAA CTTTATTCTA ATCATATGAA TCCAGAGATG GCGAAGATTG TAAGTGTATA CGCAGCGAAC AAGGATTTGT TCTTCAAGCA GTTTGCAGAA TCAATGGTGA 
AGATGAGTAG TATTAAACTG CTAACAGGAT CCAAGGGAGA AATTCGACAC AACTGTCGCC GAATGAATTG A 

Retrieve as FASTA  
CDS►
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.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
ATGGCTGCCA GTTTTCATCC CTTTCACGGC ACAGTAAATG TTATTATATC ACACCTGGTT ATTCTTCTTG CACTGTTGAT TCGGGGCAGT GCTGCGTATG ACAATGACTT GAGCCCGTAT  TTCTACGAAC ATTCTTGCCC GCATGCTCTA TCCATTGTAA AGTCCGTGGT AAAAAAGGCC GTGGAAAAGG AGGCTCGAAT GGCAGCATCT TTACTTCGTC TTCATTTTCA CGATTGCTTT  GTTCACGGCT GCGATGCTTC CGTGTTGTTA GACGACACGC CTTCATTCAG AGGAGAGAAG ACGGCAAATC CCAATAAGAA TTCGTTAAGA GGATTTGACG TGGTGGACGA CATCAAAAGC  CAATTGGAGA GTGCATGCCC CGGAATTGTG TCGTGTGCTG ACATCGTTGC CATTGCTGCC CGTGATTCTG TAGCGTTGAG AGGAGGTCCA GAGTGGAGTG TCCCGTTGGG AAGAAGAGAC  TCGAGATGGG CAAGTTTCAG CGGAGCGAAT CAGAACATTC CGGCGCCAAA TTCCACTCTG CAGACTCTCA CCACAAAATT CGAACTTCAA GGCCTTAACG AAGAAGACTT GGTTGCACTC  TCCGGCGGCC ACACCATCGG CCAGGCGCGG TGCATAAGCT TCAGGCAGAG AGTGTACGGT CGGAGTGGAA ATCAAAAACC TGATTTAGCC ATCGATGAGA GCTATTCAAC ACAACTGAAA  TCAAGCTGTC CGAGATCGGG TGGAGATAAC AACTTATCGC CTTTAGATGT TGTCAGCCCA ACTAAATTTG ACAACCAATA CTTCAAAAAC GTGGAGAATT TGAAGGGACT TTTGGTTACT  GATGCGGAAC TTTATTCTAA TCATATGAAT CCAGAGATGG CGAAGATTGT AAGTGTATAC GCAGCGAACA AGGATTTGTT CTTCAAGCAG TTTGCAGAAT CAATGGTGAA GATGAGTAGT 
ATTAAACTGC TAACAGGATC CAAGGGAGAA ATTCGACACA ACTGTCGCCG AATGAATTGA 

Retrieve as FASTA  
cDNA►
Send to BLAST
.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2
CAAGCACAAG CTTAGCTCAG TGGTGATCCA TCATTCGTTA TACGTCCTTA GCTCTCTCAT CTCTCGCCTG CTATTAAATC TCGAGTGAAT GGCTGCCAGT TTTCATCCCT TTCACGGCAC  AGTAAATGTT ATTATATCAC ACCTGGTTAT TCTTCTTGCA CTGTTGATTC GGGGCAGTGC TGCGTATGAC AATGACTTGA GCCCGTATTT CTACGAACAT TCTTGCCCGC ATGCTCTATC  CATTGTAAAG TCCGTGGTAA AAAAGGCCGT GGAAAAGGAG GCTCGAATGG CAGCATCTTT ACTTCGTCTT CATTTTCACG ATTGCTTTGT TCACGGCTGC GATGCTTCCG TGTTGTTAGA  CGACACGCCT TCATTCAGAG GAGAGAAGAC GGCAAATCCC AATAAGAATT CGTTAAGAGG ATTTGACGTG GTGGACGACA TCAAAAGCCA ATTGGAGAGT GCATGCCCCG GAATTGTGTC  GTGTGCTGAC ATCGTTGCCA TTGCTGCCCG TGATTCTGTA GCGTTGAGAG GAGGTCCAGA GTGGAGTGTC CCGTTGGGAA GAAGAGACTC GAGATGGGCA AGTTTCAGCG GAGCGAATCA  GAACATTCCG GCGCCAAATT CCACTCTGCA GACTCTCACC ACAAAATTCG AACTTCAAGG CCTTAACGAA GAAGACTTGG TTGCACTCTC CGGCGGCCAC ACCATCGGCC AGGCGCGGTG  CATAAGCTTC AGGCAGAGAG TGTACGGTCG GAGTGGAAAT CAAAAACCTG ATTTAGCCAT CGATGAGAGC TATTCAACAC AACTGAAATC AAGCTGTCCG AGATCGGGTG GAGATAACAA  CTTATCGCCT TTAGATGTTG TCAGCCCAAC TAAATTTGAC AACCAATACT TCAAAAACGT GGAGAATTTG AAGGGACTTT TGGTTACTGA TGCGGAACTT TATTCTAATC ATATGAATCC  AGAGATGGCG AAGATTGTAA GTGTATACGC AGCGAACAAG GATTTGTTCT TCAAGCAGTT TGCAGAATCA ATGGTGAAGA TGAGTAGTAT TAAACTGCTA ACAGGATCCA AGGGAGAAAT  TCGACACAAC TGTCGCCGAA TGAATTGAAT CACTGCATGA TTTCACAGGT TTTGCAGTCA ATAAACGTTG TGGTATCATT TGTAGACACG GTACCATTAA AACTCTTAGG AATAATAGCG  GATATTCGTG TCCTTCCCAA TTACATGTTT GTTCGAAAAA TTATACGTTG TGATGTAACT TTTATTTCCT AATAAAATGT TGGTGTGGGA AAGGGAAACA CATTCAATAG TTCGCCCATG 
CCTGAACAAG TCAAG 

Retrieve as FASTA