View Redoxidase 13226

Entry information : SpolPrx25 ( Spipo10G0044700)

Entry ID	13226
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-09 (Christophe Dunand)
Sequence status	complete
Reviewer	Christophe Dunand
Last annotation changes	2016-02-27 (Christophe Dunand)

Peroxidase information: SpolPrx25 ( Spipo10G0044700)

Name (synonym)

SpolPrx25 ( Spipo10G0044700)

Class

Class III peroxidase [Orthogroup: Prx002]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolPrx25 start..stop	S start..stop
CescPrx37	513	0	7..329	13..336
LminPrx28	506	0	22..327	21..325
LminPrx01	502	0	22..327	21..325
SpolPrx16	477	3.65e-171	22..327	28..329

Gene structure Fichier

Exons►

Literature and cross-references SpolPrx25 ( Spipo10G0044700)

DNA ref.	Phytozome 12: pseudo10 (3323893..3324882)
Cluster/Prediction ref.	Phytozome Gene 12: 31520024

Protein sequence: SpolPrx25 ( Spipo10G0044700)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	329 (308)
PWM (Da):	34954.83 (33013.8)	Transmb domain:	i7-24o
PI (pH):	7.31 (7.31)	Peptide Signal:	cut: 22 range:22-329

Sequence
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Send to Peroxiscan

*.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

MGGSAVAALV VVVVAAATAM AEGKLAVDYY AATCPRAAEI VSETVVSKQI ASPTTAAGTL RVFFHDCFLD GCDASLLVSS TAFHRAERDA DINLSLPGDA FDLVVRAKTA LELTCPGTVS CADVLALATR DLLTMLGGPF FPVRLGRKDS LVSRADLAAA RLPLANATVS ELIALFAQRG FSAQELVALS GAHTVGFAHC KEFAARMGLD GGGKADAAAD PRYAEGVRRA CADYRSRPTV
AVFNDIMTPN KFDNVYFQNL RRGLGLLGTD QALAGDPRTR PFVELYAADE GVFFKDFARA MEKLSVYGVK TGRQGEVRRR CDQFNAFTT*

Retrieve as FASTA

Remarks

Complete sequence from genomic (no intron).

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

GGACATATTA AACGAATGTA AGCCAAGAAT TATGCAAAGA TTTAACATAA GTAGGATCGT AAAACGGGAT TCTAAAGAGA AGGAAAATGA GAGCACCATG GCGAAGTCGA TCGTATTCAG AGCCATAGTC CGTGGCTGCA TAGGCAGCCC TCTCTGCGTC GACCCTCCCT TCTCCTCGGG CCACCCTGTC TCCTTGTTCT GCGTCCTCGT CTTCCTCGCC GTTCGTCTCT TCGAACTCAC TCTCGTACCC ATCGTCAGGG TCTTCCCAGA ACCCCCCTGA GGGTTGAGCC CGGATGAACC AGCTCCCCTG TGACGCGCCG GCCAAAGAAC CCCGCGACGG CGATGGGGTG AGCCCAGGAA GACGAAGGAC GGAAGGAGAG GCCACAGAGG CGGCCTTGCA TGGCGCCAAA GCCACCAGGC GGCGGAATCC GTGAGGAGAG TAGGAAGAGC GGGCCGGCCC CGCCGCGGCC GCCGACCACC CGACCGGAGA GAGCGCCATG GCGGCTGAAC TCCAGCGAGT AGAAAGGAGG ATAAAGGTGA GCTTTTTACT CCAGCACCGC GTTGGTTTTT TTTTAGAAGT GTTATTCCGT TAAATATTTA ATTATTCATT AATTTTTTAA AATTGGATAA ATATTTTCCA AGGAAATATA TATTTATTTT ATAAATTTTA GTATTATAAA AAAATTTATG TTCTACAATT CCGCCCTCTA TTACGCATTG GATTTTCTGA ACTGGATATT GTACTAGAGA CGATAAACAT TTTTTAGCTA TTTTCAATGC TCTAAAAATA TTTTTAGAAA TATGTATCCA TGATTATATA TATCTTAGAT ATCATAAATG GCAATAAGAA AGTTGACTCG TAGGTATGGG TGTTGACGGA TGGAGTTGAC CACATTCTGA ACACATCCAC ACCCAAACTG GACAAGAAAG AAACTCTTTC ATAATAAGGC CAAAGGGACA AAGGACATTT CTCATGGTCA ACTCTGGACA TTATAAAGTC AACGTTTTTT GAAAACCATG AACAGAAACT GTCAGTGATA ATGCAAATTT CTTGGGAACT TTTAAAGTTA TTACTGATGA TCGTTGACTT TGACCAAAGC TTTCCTGAGA AAAGTCAGCT AGCATGGCCC TCCAGCCTCG TCAGGCCCAT TGGATCCTTA GTAGGTCAGG TGACAATTGG GCCGAATGAG GCGTGGCCTA GTAGGTTCCT AATTGGGCCC AGAGCCCACT CTCTCTCTCT CATTAGCGAG AGCGAGAGAG AGAGAGAGAG AGAGAAAGAG AGAGAGAGAG ACAGAGGGTA CTAGAAGCGG CCCATCTGGG CCAGCCCAGG GCCCGGTTGA AAGGGACCGG TTCACAGTAC GTGTACCGCC GGTCCGGTGG AGGAGTCATG AGGTGGGCCC CACAAGTCAC GTGGTGGACT CCCCACTCGC TCGACCCAAA TTTCTAAAAG CAGAAGCTAT GCTTACGTGG ACGACGAACC GAGCGGGACC ACCGCTGACC GGACCGTTCC GGCCCAGTGC GGACAAGGCG AGCCTTCCCG CAGTCGTAGT TGCCTGCCCC ACCCTCACGT GCTCCCATTC GAATCGGCAC ACCACCCCAG TATCTGCGGG CCCCATCATC CCAATAATAA ATAATAATAA TAATAATCAT TAAATAATTA CTATTCAATT AATGATTATC TCATAATATT ATCCTAGATC AATGCATAAA CATAGGGGGA TGTTTACTGC GTTAAGACCA TTTTGACCTT CATCTGTCTC TCTCTCTCTC TCTTAAACGA TGTATAACAT AAATATATCC GTTGTAAAAC CCTACTCTCT CTCTCTCTCT CTCTAGCCAT ATCCTAAGAC GCGTCCCCAT CCCTCTTATT GTCCGTGTTT GGCTGTAGAT CTGCAAGGAT TCCTTCTCTC TCTCTCTCTC TCTCTGTGTA GCGAGCCATT TCGTCCAGGA GGCGGTGTTG GTGGCGGATC TCTCCGGGGT TCCGCTTCGG AAGGTCTAAG ATGGGTGGGT CAGCGGTGGC GGCGCTGGTG GTGGTGGTGG TGGCGGCGGC GACGGCAATG GCGGAGGGGA AGCTTGCGGT GGACTACTAC GCGGCGACCT GCCCGCGGGC GGCGGAGATC GTATCAGAGA CGGTGGTGAG CAAGCAGATC GCGAGCCCCA CTACGGCGGC GGGGACCCTG CGGGTCTTCT TCCACGACTG CTTCCTCGAC GGCTGCGACG CCTCCTTGCT CGTCTCCTCC ACCGCCTTCC ACCGCGCCGA GCGCGACGCC GACATCAACC TCTCCCTCCC CGGCGACGCC TTCGACCTCG TCGTCCGCGC CAAGACCGCC CTCGAGCTCA CCTGCCCCGG CACCGTCTCC TGCGCCGACG TCCTCGCCCT CGCCACCCGC GACCTCCTCA CCATGCTCGG CGGCCCCTTC TTCCCCGTGC GCCTCGGGCG AAAGGACAGC CTCGTCTCAC GCGCCGACCT CGCCGCCGCG CGCCTCCCCC TCGCCAACGC CACCGTCTCC GAGCTCATCG CGCTCTTTGC CCAGCGCGGC TTCTCGGCGC AGGAGCTGGT CGCGCTGTCC GGCGCGCACA CCGTCGGGTT TGCGCACTGC AAGGAGTTCG CCGCGCGGAT GGGGCTGGAC GGCGGCGGCA AGGCCGATGC GGCGGCGGAT CCGCGCTATG CGGAGGGGGT GAGGAGGGCG TGCGCGGACT ACCGCAGCAG GCCGACGGTG GCGGTGTTCA ACGACATCAT GACGCCGAAC AAGTTCGACA ACGTGTATTT CCAGAATCTG AGGAGGGGGC TGGGGCTGCT GGGGACGGAC CAGGCGCTGG CGGGGGACCC GAGGACGAGG CCGTTCGTGG AGCTCTACGC CGCCGACGAG GGCGTCTTCT
TCAAGGACTT CGCTCGCGCC ATGGAGAAGC TCAGCGTCTA CGGGGTCAAG ACCGGCCGCC AAGGGGAGGT CCGGCGGCGC TGCGATCAGT TCAACGCCTT CACCACCTGA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

ATGGGTGGGT CAGCGGTGGC GGCGCTGGTG GTGGTGGTGG TGGCGGCGGC GACGGCAATG GCGGAGGGGA AGCTTGCGGT GGACTACTAC GCGGCGACCT GCCCGCGGGC GGCGGAGATC GTATCAGAGA CGGTGGTGAG CAAGCAGATC GCGAGCCCCA CTACGGCGGC GGGGACCCTG CGGGTCTTCT TCCACGACTG CTTCCTCGAC GGCTGCGACG CCTCCTTGCT CGTCTCCTCC ACCGCCTTCC ACCGCGCCGA GCGCGACGCC GACATCAACC TCTCCCTCCC CGGCGACGCC TTCGACCTCG TCGTCCGCGC CAAGACCGCC CTCGAGCTCA CCTGCCCCGG CACCGTCTCC TGCGCCGACG TCCTCGCCCT CGCCACCCGC GACCTCCTCA CCATGCTCGG CGGCCCCTTC TTCCCCGTGC GCCTCGGGCG AAAGGACAGC CTCGTCTCAC GCGCCGACCT CGCCGCCGCG CGCCTCCCCC TCGCCAACGC CACCGTCTCC GAGCTCATCG CGCTCTTTGC CCAGCGCGGC TTCTCGGCGC AGGAGCTGGT CGCGCTGTCC GGCGCGCACA CCGTCGGGTT TGCGCACTGC AAGGAGTTCG CCGCGCGGAT GGGGCTGGAC GGCGGCGGCA AGGCCGATGC GGCGGCGGAT CCGCGCTATG CGGAGGGGGT GAGGAGGGCG TGCGCGGACT ACCGCAGCAG GCCGACGGTG GCGGTGTTCA ACGACATCAT GACGCCGAAC AAGTTCGACA ACGTGTATTT CCAGAATCTG AGGAGGGGGC TGGGGCTGCT GGGGACGGAC CAGGCGCTGG CGGGGGACCC GAGGACGAGG CCGTTCGTGG AGCTCTACGC CGCCGACGAG GGCGTCTTCT TCAAGGACTT CGCTCGCGCC ATGGAGAAGC TCAGCGTCTA CGGGGTCAAG ACCGGCCGCC AAGGGGAGGT CCGGCGGCGC
TGCGATCAGT TCAACGCCTT CACCACCTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

Retrieve as FASTA