View Redoxidase 13228

Entry information : SpolPrx26 (Spipo4G0080500)

Entry ID	13228
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-09 (Christophe Dunand)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2016-02-25 (Catherine Mathe)

Peroxidase information: SpolPrx26 (Spipo4G0080500)

Name (synonym)

SpolPrx26 (Spipo4G0080500)

Class

Class III peroxidase [Orthogroup: Prx028]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolPrx26 start..stop	S start..stop
LminPrx31	554	0	1..314	10..323
LminPrx16	546	0	1..314	11..324
LminPrx30	535	0	1..314	11..324
CescPrx48	478	7.5e-172	3..314	11..322

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13228' 'join(6522429..6522623,6522716..6522904,6522987..6523149,6523225..6523622)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	6522429..6522623	193	N° 2	6522716..6522904	187	N° 3	6522987..6523149	161	N° 4	6523225..6523622	396
join(6522429..6522623,6522716..6522904,6522987..6523149,6523225..6523622)

Literature and cross-references SpolPrx26 (Spipo4G0080500)

DNA ref.	Phytozome 12: pseudo4 (6522429..6523622)
Cluster/Prediction ref.	Phytozome Gene 12: 31503545

Protein sequence: SpolPrx26 (Spipo4G0080500)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	314 (295)
PWM (Da):	33951.33 (31878.1)
PI (pH):	7.99 (8.21)	Peptide Signal:	cut: 20 range:20-314

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MLLLLIGLAIAGPRLDVEALSMDYYAASCPFVEMIVRDAVNQALRRDPTLSGPLLRMHFHDCFVEGCDGSVLIDSTKGNKAEKDSPANLSLRGFEVIDQAKKAVEQHCPGVVSCADIVAM
VARDAVLWAGGPLYDIPKGRLDGRRSRIEDTINLPAPTLNSSALIKIFGQRGFTVQEMVALSGGHTLGVARCSSFKNRLSNFNSISRVDPSLDQSFAKTLVKACAAGDSSEVSFDSTRTL
FDNAYFRALPVGGGLLSSDQTLFTSPETRGLVSAYAMNPARFFLDFSQAMVKMGLLKVKDGARGEVRLDCRRVN*

Retrieve as FASTA

Remarks

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

CTTTTATCAC AATTGAAACA TGTCATTTTG ATGGAGTTAT TGTATTTTTC AATCTAGATG ACACTTTTAG CATGAATTAT TTAGCTTGGA GATGAACTAA TGTGTCTCAA ATGGGCTTGT CTCACAAAAC CCCTAGACGA TAGTCCAAGC TTTTAAGAAA TTTAAAACAA TCATCACTCA AAGCCTGCTT GAATGAAAGG CATCCTTGAT TGATCTCTTC TTCAACTCAT CAAATCTCCA AAAACTCATA ACATGGAGCT TTGAGTTGTA TTTAAAGATA TGATGGTACC CAGTGGGCAA TTGTATTCTA GATGGCTTGA GTGTATTACA TCAACATGAG AAACTTTTGG GATAGAGTGA GTGACAAATA TTGAGGATAA CCTTATGACA TGTCATGCAC ACTTAATTTT CATCTTTTTT CAATCTAATA TTAAATAATA TAATAGTTTC TAAAGTCACT AAATTTCTTG TTGCATTAAC CAATCTACAC CTGAAGAATG TTCTACCCAT AGCTAAGTTT ACAAAAAATA TTGATTTAAT TCAAAAAATT GCATGCCAAG ACACTCCACA GCTAAATGAA AAGGGTCAGT AAAGGCATCA GATAAATAAA GATTTTTTAT TTACCATGAT TTATCATTTA GATGAAAATG TTATTTGATG TCTCATTACC TTGCCATATG CATTGTGGTC CTAAGTGAGC ATGGAGAACA ATGTTTTAAA CAAGATGCTA CATTGGGCAA ATCTATTGCA ATGCATGTTG GATGGAGGTT CAATCTAATT GATGATATGA CTGTGTTGAA ATAATCTCCC CTATAGCTAA GCCATGCACC AAGACTCTAA ATAACTACGT CGATGTGATA CCGACCAACT AGAGGTAAAA AATGACTCGG CCAATTAAAG GAATATACAA GTACATGCGC TCACACACAC TCTTCTCAAC CTCGTTTTTT TAACTTTAGA AGATCCTTGT GCGGATTAGG CCAAGCTCCA CGGACCCTGT TTGATAGGAT GGCCAACCTT AGTTCTTTAG TACACACGAA CAGTGCGGGC CAAGTGTTCG ACAATCAGTT CAAGAGGCTG GTAGAACCTG GATCTTTGAC CTGACAACAA TGATAAAGCT GCCCGCGAGA AAGTAGAGCT TTTAGGGGAG TGGAGGCAAC TCGGTGGGGG AGGGCTGGCC ACTTCGGGAT GTCGACAAGA AGGAAGTCCA GTCACAGACA GGTGCCCCCG GGACGGCGAC CGAGACTGGG GAGCTTCTCT CCGTCTGTTC CAGTCCCATT CTCACTACTC CTGAGAAGAC GATAGAGAAG TAGGTGACGA CTATGATGGG GGCAAGACGA GCTCTCCAGT AGCTCGGTGC AGCTGTCGTC CGCCACATCT CGTTGGTGAT GGCATCGGTT ATGGGAAATA TGATCGTATC ACGCGGATGC GAGGTGTTCT TCCGAGGAGG CGCCACTATG GACGAAAGGC CGATGATGAT AGCAACGACT GGGAAGATAA AGAGAATCCG AATGTGGAGA CCAGCTGCAA CCTATCTCAG CGTCACGTTC AGCCCACGTG ATTATTGAAG TTTATCAAAA TCATCATCGA ACTGGAAAGA GATTCGAATT GACCATGGTC AACCCACTCG TGCCCATCGT CATGTGTAAC AGAAGGTGCC TGCACTGGCG GCTTCCCCCG CTGATGACGA TGAGTGAGGG ATGGGAAGAG CTTTTCGACC TATTTTTTAG TTAAAGCAGC TTCCAGTTTT GAGTGTCCTT GGTCACCAAT GGTCATTATC TGACTCTCAC AGGAGGGGAT AAGGGGATCC AGAGCCAAAA GCAGTGGAGA TGACGGGTAT ATATAGCCAG CCTTCGTCCT CCCCTTCGAG CATCAGCTTT ACTCATCCCT TCCAATCGTC TGAAACCCCA GCCTCTGCAA CATCTACACC GTTTCCCCTT TTCCTGATCT TCTGGAAGAT TTTTGGTAGG GTTCTGATGG GTAGTTCTCG TATGGCGGAG ATGCTGCTGC TGCTGATCGG GTTGGCGATT GCCGGGCCCA GATTGGATGT GGAAGCTCTG TCGATGGATT ACTACGCAGC TTCCTGCCCT TTCGTGGAGA TGATAGTCAG AGACGCAGTA AATCAAGCTC TCCGGAGGGA TCCCACCCTT TCTGGGCCGC TTTTGAGGAT GCACTTCCAC GACTGCTTCG TGGAGGTGGG TTCAGGGTCT AGACTTCATC ACCATCATCA TCATCGTCTT CATCCGCTAC CTCTTCTTCA TGGATCTTCC GGCTTTGACT GGTGCAGGGC TGCGATGGCT CCGTTCTGAT CGATAGCACG AAGGGTAACA AGGCAGAGAA AGACTCTCCT GCGAATCTAA GCCTGCGGGG CTTCGAGGTC ATCGACCAGG CAAAGAAGGC CGTAGAACAG CATTGCCCGG GAGTCGTCTC TTGCGCTGAC ATCGTCGCCA TGGTGGCGAG GGATGCTGTC CTCTGGGTAA ATGACCAGAC ATTCTAAATT CAGAGTCTGC ACCTGAAACG TTGACTTTCA TGTTAAACCT GCCGTTGCCC TCTTCCAGGC CGGAGGTCCG CTCTACGACA TTCCCAAGGG CCGACTGGAC GGCCGGAGAT CCAGAATAGA AGACACCATC AACCTGCCAG CCCCGACTCT CAACAGCTCG GCCCTCATCA AGATTTTCGG TCAACGCGGC TTCACTGTTC AGGAGATGGT CGCCCTGAGC GGTAACGATC GAATTGCGTC TTTTCTTCTT CCGGCTCGAC ACGTCTGACA GCGATCGCCG GCGGCCGCCA TTTCAGGGGG GCACACTCTC GGTGTGGCGC GGTGCTCCTC GTTCAAGAAC CGGCTGAGCA ACTTCAACTC CATCAGCAGG GTTGACCCGT CCCTCGACCA GAGCTTCGCC AAGACACTGG TCAAAGCTTG CGCCGCCGGC GACAGCTCCG AGGTGTCGTT TGACTCGACC AGGACCTTGT TCGACAACGC CTATTTCCGG GCCCTCCCTG TCGGAGGCGG CCTCCTGAGC TCTGACCAGA CGCTGTTCAC AAGCCCGGAG ACGAGGGGCC TGGTGAGCGC CTACGCCATG AACCCGGCAA GGTTCTTCCT TGACTTCTCG CAGGCCATGG
TGAAGATGGG CCTGCTCAAA GTCAAAGACG GCGCCCGCGG GGAGGTCCGC CTTGACTGCC GCAGGGTCAA CTGA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCTGCTGCTGCTGATCGGGTTGGCGATTGCCGGGCCCAGATTGGATGTGGAAGCTCTGTCGATGGATTACTACGCAGCTTCCTGCCCTTTCGTGGAGATGATAGTCAGAGACGCAGTA
AATCAAGCTCTCCGGAGGGATCCCACCCTTTCTGGGCCGCTTTTGAGGATGCACTTCCACGACTGCTTCGTGGAGAGGTGGGTTCAGGGTCTAGACTTCATCACCATCATCATCATCGTC
TTCATCCGCTACCTCTTCTTCATGGATCTTCCGGCTTTGACTGGTGCAGGGCTGCGATGGCTCCGTTCTGATCGATAGCACGAAGGGTAACAAGGCAGAGAAAGACTCTCCTGCGAATCT
AAGCCTGCGGGGCTTCGAGGTCATCGACCAGGCAAAGAAGGCCGTAGAACAGCATTGCCCGGGAGTCGTCTCTTGCGCTGACATCGTCGCCATGGTGGCGAGGGATGCTGTCCTCTGGGG
GTAAATGACCAGACATTCTAAATTCAGAGTCTGCACCTGAAACGTTGACTTTCATGTTAAACCTGCCGTTGCCCTCTTCCAGGCCGGAGGTCCGCTCTACGACATTCCCAAGGGCCGACT
GGACGGCCGGAGATCCAGAATAGAAGACACCATCAACCTGCCAGCCCCGACTCTCAACAGCTCGGCCCTCATCAAGATTTTCGGTCAACGCGGCTTCACTGTTCAGGAGATGGTCGCCCT
GAGCGCGGTAACGATCGAATTGCGTCTTTTCTTCTTCCGGCTCGACACGTCTGACAGCGATCGCCGGCGGCCGCCATTTCAGGGGGGCACACTCTCGGTGTGGCGCGGTGCTCCTCGTTC
AAGAACCGGCTGAGCAACTTCAACTCCATCAGCAGGGTTGACCCGTCCCTCGACCAGAGCTTCGCCAAGACACTGGTCAAAGCTTGCGCCGCCGGCGACAGCTCCGAGGTGTCGTTTGAC
TCGACCAGGACCTTGTTCGACAACGCCTATTTCCGGGCCCTCCCTGTCGGAGGCGGCCTCCTGAGCTCTGACCAGACGCTGTTCACAAGCCCGGAGACGAGGGGCCTGGTGAGCGCCTAC
GCCATGAACCCGGCAAGGTTCTTCCTTGACTTCTCGCAGGCCATGGTGAAGATGGGCCTGCTCAAAGTCAAAGACGGCGCCCGCGGGGAGGTCCGCCTTGACTGCCGCAGGGTCAACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGCTGCTGCTGCTGATCGGGTTGGCGATTGCCGGGCCCAGATTGGATGTGGAAGCTCTGTCGATGGATTACTACGCAGCTTCCTGCCCTTTCGTGGAGATGATAGTCAGAGACGCAGTA
AATCAAGCTCTCCGGAGGGATCCCACCCTTTCTGGGCCGCTTTTGAGGATGCACTTCCACGACTGCTTCGTGGAGGGCTGCGATGGCTCCGTTCTGATCGATAGCACGAAGGGTAACAAG
GCAGAGAAAGACTCTCCTGCGAATCTAAGCCTGCGGGGCTTCGAGGTCATCGACCAGGCAAAGAAGGCCGTAGAACAGCATTGCCCGGGAGTCGTCTCTTGCGCTGACATCGTCGCCATG
GTGGCGAGGGATGCTGTCCTCTGGGCCGGAGGTCCGCTCTACGACATTCCCAAGGGCCGACTGGACGGCCGGAGATCCAGAATAGAAGACACCATCAACCTGCCAGCCCCGACTCTCAAC
AGCTCGGCCCTCATCAAGATTTTCGGTCAACGCGGCTTCACTGTTCAGGAGATGGTCGCCCTGAGCGGGGGGCACACTCTCGGTGTGGCGCGGTGCTCCTCGTTCAAGAACCGGCTGAGC
AACTTCAACTCCATCAGCAGGGTTGACCCGTCCCTCGACCAGAGCTTCGCCAAGACACTGGTCAAAGCTTGCGCCGCCGGCGACAGCTCCGAGGTGTCGTTTGACTCGACCAGGACCTTG
TTCGACAACGCCTATTTCCGGGCCCTCCCTGTCGGAGGCGGCCTCCTGAGCTCTGACCAGACGCTGTTCACAAGCCCGGAGACGAGGGGCCTGGTGAGCGCCTACGCCATGAACCCGGCA
AGGTTCTTCCTTGACTTCTCGCAGGCCATGGTGAAGATGGGCCTGCTCAAAGTCAAAGACGGCGCCCGCGGGGAGGTCCGCCTTGACTGCCGCAGGGTCAACTGA

Retrieve as FASTA