View Redoxidase 13237

Entry information : SpolAPx-R (Spipo21G0000700)

Entry ID	13237
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-17 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2015-06-17 (Christophe Dunand)

Peroxidase information: SpolAPx-R (Spipo21G0000700)

Name (synonym)

SpolAPx-R (Spipo21G0000700)

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolAPx-R start..stop	S start..stop
LminAPx-R02	433	6.38e-153	1..319	39..401
LminAPx-R01	424	2.6e-149	10..319	48..403
CescAPx-R01	389	5.79e-136	1..316	2..353
NnAPx-R01	374	1.73e-130	85..319	102..334

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13237' 'join(66019..66217,67023..67190,67316..67386,67604..67646,67740..67836,68184..68267,69177..69301,69431..69500,69590..69692)'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	66019..66217	197	N° 2	67023..67190	166	N° 3	67316..67386	69	N° 4	67604..67646	41
N° 5	67740..67836	95	N° 6	68184..68267	82	N° 7	69177..69301	123	N° 8	69431..69500	68
N° 9	69590..69692	101
join(66019..66217,67023..67190,67316..67386,67604..67646,67740..67836,68184..682 67,69177..69301,69431..69500,69590..69692)

Literature and cross-references SpolAPx-R (Spipo21G0000700)

Protein sequence: SpolAPx-R (Spipo21G0000700)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	319
PWM (Da):	34692.73
PI (pH):	8.68

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MTTAATTAVPSRFPFPRSRRTALRHPGDPRPRCPLRRRRTPTECLRGEQVENPCSSSSSSEGHRGTVHDVCLLIFAVSRAVESGESLLVRTEVRKVLSKSKAPGVLRLAFHDAGTFDMND
GTGGMNGSIILELDRPENAGLRRSVVLEKAKSELDKVQNVSWADLVAVAGAEAVSLCGGPVIPIQLGRMDTSIPDPEGKLPQESLGAFDLKKCFFEKGFSTQELVTLSGAHTLGGKGFGS
PIVFDNTYYKILLERPWASSGSSMSSMVGLPSDHALVEDAECLRWITIYAADERKFFEDFKRAYIKLVNTGASWRNV

Retrieve as FASTA

Remarks

Complete sequence from genomic (8 introns). Incorrect prediction from Phytozome (two first exons are missing).

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

CGGCAGTTCG CATCCAGCGG CGGAAGAAAT CGTCGGAGGC GCCTCTCCAC GATGGCTCCT CCGATGAGGA GGACATCTAC CTGGACAGCA TCTCCGGGAT GCCCGTACGC TTCACCTACG GGGATCTCCG GCAGGCAACA GACGACTTCT CGGTGAAGCT CGGGAGCGGC GGCTTTGGGT CGGTGTACCT CGGTAAGCTT CGAGATGGGT CCCGAGTGGC AGTGAAGAAG CTGGAGGGCG TACACCAGGG AACCAAGGAG TTCCGGGCGG AGGTCTCCAT CATAGGCAGC ATCCATCACA TCCATCTGGT CAGGCTCCGG GGCTTCTGTG CAGAGGGCAG CCACCGGCTT CTGGCTTACG AGTACATGTC GAACGGATCG CTGGATAGGT GGATCTTCCG CAAGGACAAG GAAGGCCATC AGCTGGACTG GGAGAAGAGG TTCAACATCG CCCTGGGCAC GGCCAAAGGT CTGGCGTACC TCCACGAGGA CTGCGAATCC AAGATCGTCC ACTGCGACAT TAAGCCGGAA AACGTCCTCC TGGACGACAA TTTTGAGGCC AAGGTCTCCG ATTTCGGGCT GGCAAAGATG ATGACCCGGG AGCAGAGTCA TGTGTTCACG ACGATGAGGG GCACGAGGGG GTACCTCGCG CCGGAGTGGA TCACGAACTA CGCGATTTCG GAGAAGAGCG ACGTATACAG CTTCGGAATG GTGCTGCTGG AGATCATTGG AGGCAGGAAG AACTTCGACC CGTCGGAGAC CTCGGAGAAG GCGCATTTCC CATCCTACGC TTTCAAGATG ATGGAGGAGG GGAAGCTGAG GGAGGTGCTG GACTCGACGC TGCTGTTGAG CGACAAGGAC GACAGCGTGG AGACGACTAT TAAGGTGGCA TTGTGGTGCA TCCAGGAGGA CATGACGATC AGACCGTCCA TGGCCAAGGT CGTGCAGATG CTCGAAGGTC TGACGGACGT TCCTCAGCCC CCGACATCCT CCCAGATGGG CTTCCGACTC TATGCGAATC TCATCAAGAC CATGAGCGAA GAGGGCTCCT CTGCCGCGTC GGGCCCCTCT GACTGGAACA GTGAAGCCTT GCTATCGGCG GTGCGGCTGT CCGGACCCAG ATAGCAAGAG GTGTTACGAG GTGGGTTCCT GGCACCTCCG ATCCTGCGGA GCCCGCCGTC TCGCGGACGA GACCGCCGGA GCCGACGGCA ACTTCTCTCC ATCGTCGGGT TGGGGTGCTT CCCCTCTTGT TGGAGAGGGC TCCGAATTCC ATTTAAATTT TCAATTCTTT ACTTTCGACG GAATCGGACC ATCATCGGGG ACCTCCGCGG GTCTCCTGCT TGTCTGCGTC ACATCTTCTT GCTCAGACGC CCATTCTTGT TCTTCCGGGG ATTGTGGGTG GGCATTATTT CGAGTCGAGC TTCGAGGGCG ACGCCGGCGG ACATCTCCAC TCCTCCCCAC TTGCTCTATC CTTTCGCAGC GCGACGGGAC CCGATTCCGT TTCCCATGCT TTCCAGCTCC AAAGTGCGTC CAGTTCCGGT GGACAAGTCC GAGACCGCCC GACGCTCTTC CTCGCCCCTC CGTGTACGGC CGCTGGCCAT CTTGACCCCA GGGGATCGAG GCCCCCCAGC ATCGTCGTGA TATGATCCGC AATCTGCTGG CCTCGAGTCT CCTCCGGTGG CCGAGGCGAC GCCAGGGTCT TTCTTTGTTT CCTTCCATCT AAGCGTGCCC GACGGGTACT ACCTCATCGT TCCCCGCTGA GAGGCCGGGA AGGTCCACAC ACACACACAC CCACGTACAG CCCTGCCTCA ATAAACGGGC TTCTCTTCTT GCTACTTGGA ATTCAAACTG GCTCGAGGCT CATACCCCGT CCCAATGGGC TGACCTCGGA CGAAGTCCAG CCCGAGGTAT TTTAGCTTAA
GCCTGGCCTC CCACCACCGC TCACGCCAAC CGACCGCAGG CTACCGCTGG TTTCTCCCGC TTCCCTTCCT CTTGCGGGGC

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGACGACCGCGGCGACCACCGCCGTCCCCAGCCGCTTCCCGTTCCCACGTTCAAGACGAACAGCGCTTCGGCATCCAGGAGACCCACGGCCACGCTGCCCACTCAGACGCCGCCGGACG
CCCACCGAGTGCCTGCGAGGGGAGCAAGTGGAGAACCCCTGCTCGTCCTCATCCTCCTCGGAAGGACACAGGGGCACAGAGGTGACGATATCCCCTTTTTCCTCGCTGGATCCTCTTCAA
CACCATCCCCCTTCCCACAAGGAGCTCTCTCCTTCTACTGGACGAACAGCCATAATCATTCATGCACGGGCATATATTGACCCATGCCCGTACCTTTCATCGATAAAATTTCTATTTTGC
GTTGTGGATGCCACCTCTACAGAAAATTCGCCCCCCTTGCCTTTTTTTCATCTCTCCTTAGGTTTTATTTGCCCATAATTTGACTGCAGGGGAGAGCAGGTCCTTCGCCTTCTACGGAAG
AAGATTTTTCTTTCTGGCCACGGCTCCGTTGTTGCTCTCCAGTCAAGGCTCATCAGAATACTCCAATGCCAATTCACTACAGTATGTTTCATAATTTCCTTTCCGCTTCCTATCTTCCCT
CTGAGGCAGCGGCCTCCAAATCCGCCCGATTCCTTGAACCCTGCGAGACTAGTGTAGACATGAACCCGAGTTCTGTAGTTCGATGGTCTGCTGCCTCTCGGTTCCGCCATGCTGCTTCAG
TTTGACCGCATCCTTTCAAAACATTTTATACATCAATAAAGTAATAGAGGTCGATAAGTCACAAAAAACAATCTTAGAGATCAGTAAAGTTCTGGTAGAGTTGTGGCATCTTTCAAGAGA
CGAGAGCAACGTGCCAGTTTGGTAGCAGCCCAGTGGGGTTCAAGCAATGCTCTCGACAGGTGATGTCGGCGAGCTTTTGCATGTGGCCACAAGGAGTGCTGGGCTAGATCAATGGCGCAT
ACCAGGAGAAATTTAATTCCTTTCTTTTAAATTTCTGCACTTTGAGTACATGATGTCTGTCTTCTCATATTTGCTGTCAGCAGAGCAGTAGAGTCTGGCGAATCTTTGCTTGTTCGAACT
GAGGTAAGGAAAGTCCTTTCAAAGTCCAAAGCTCCTGGGGTACTTCGGTTGGCCTTCCATGATGCAGGGACATTTGACATGAATGATGGCACAGAGGTTTATTTTGGAGCTAGAACTAGA
GAACGTTTCATGTCTCTTACTTTTGTCTACTCTACCTTGAATGGTGTCACGCAACATCAGGCTGTCTTTTAATGGATTATATGCTTTACGTTTCCTTGCAGGTGGAATGAATGGCTCAAT
TATTTTAGAACTTGATAGACCTGAAAATGCAGGTTTGCGTAGATCTGTGAAGAGGTGTGTCTGTTTTTCATCCTCTCTTTCGTGCATGTTTACGTGTTCAAAAAATATTTTTGTCTAGTT
GGTGAACATATATTATTGCTTCGTATCATGACCACCCACGCTCATTTTGGTGGATTATTACATGATATTATTTATGATTCTTCTTTTGTCGGTCTCTCCCTGTCTATTTATCCTCTTATC
GACTCTCCACTTTGTTTTCTTTTCTGATTAGGTTTTGGAAAAAGCAAAGAGCGAGTTGGATAAGGTTCAGAATGTGGTATGACTTTCCTATTCACTGTAATTCATGTGTTCCTGCACGTG
ATTATTCTCTCCTCTTCTTGAAATTTATCATGGGTTACACTGGTGTCAGTGTCCTGGGCTGATTTGGTTGCTGTGGCTGGTGCGGAAGCCGTTTCGTTATGTGGAGGTCCCGTCATTCCT
ATTCAGTTAGGCAGGATGGATACAAGAGGTTAAATTTCACCTTACAAACATTGCACTCTTGCTAAGAAAAAAAAGAAGAAGAAGATGGATACAGGGTAATTAGTCCCGACTGTGTGATCA
AATCGGTCGATGGCTGTTTATGTGAATAAAAATTATCGATAATGCCTCCTTGAATATCTTATGAATTTTTCTCTTCTGATACGTAATTTTGGGTTTCTTGGAGGTTTACTTTCACAAGCA
GAAAAATTAAAGCCGATGACCTGATCCCTTTCTTGGTTAAATTCTATATAATGACAGGTCTCACCCCTTTTTTAACGGATGGTCAGTCGCACCTGAACCACCAGTCTTCTAACCTTTGGA
TTTTCTATCATCCAGTATACCAGATCCCGAGGGAAAACTTCCCCAAGAGTCGCTGGGCGCTTTTGACTTAAAGAAGTGTTTCTTTGAGAAAGGCTTCTCTCGTGAGTAAATATTCTCATG
CCATGGCATGGGTTTTTTCTTTTCTTTTGCTTTTTCTCTTGTCTATGTTACTCTACCTGTTTTGCGTAATCAGCATAATTTAAACGGATAAATCTGTGTTTATTAATATGCTACAAGCTT
TTCCATTTCACCCGATTTTCTCTGCTGTATACTTGAAGGTTATAAGTTTTTTCCTTGTGCATGTATGATGTTCCTGGGGCCACTCAGCTCAAACTCCTCATGGGTAGGATGTAATTTGGT
CCTCTGGTCATTCTAGTCGAAAAATAACAGTCCAGCGTAGTCTGTGTATAGTAGAAATGATGCGCGTGAAGATGGTGCAAAGTCAGATTATGCTCTGTTCATATGATTTGATGTGGACCT
ACCAAGTCTTTTATTAAAGTCAGATTATGTCTCATGTTTACTGGGCACACGTTAGATGTGCGCAGAGTTCTTTTATAAAAAAAATAATAATGTCATGGGAATTCCGATAATGATGGGTTT
TGCAGTGTATCAGAGCTTTTCCACCGTCGAGAACTTGTGATATTTTTTGCAAACGTTCCATGTTGCTCTTATGTCTAGTATGTATGCCTCTGCATTCCTCTCCTCTATCGTCGACGATCA
AGTTTGCTTTGCTCAAATATGAATGACAAAACGCTTTGATTATTCCTTCGATTATTCCTGTGTTGTTTGGACCTGCAGTGTCAATAAAAGATTTTGGAAAGCCGTTGAACCTTGTCGAAA
TCGTCCAAATGCTAAAGCCTAGAACGTCGTTTTTTGGCAAATTTGTCTTGTTATGTCAGCTGTTATTCAAGAGAACTTGCGGCGGCACGAGTCCGTCTCATGCCGCCGCGGGTTTTCTGT
TGCGGCCATCCTTTTGCTGCTGCAGTGTGAACTCGAGGGTCAAATTGCAGAACACAAGAACTGGTCACATTGTCTGGAGCTCATACGCTGGGAGGAAAAGGCTTTGGGAGCCCAATCGTC
TTCGACAACACCTACTACAAGATACTCTTGGAGAGACCGTGGGCGTCGTCCTCCGCGGTGAGTAGCCAGATGCCCGTCTGTGCAAATTGACCGCATTTATTCTCCTCTGGGGATCTCATT
TGGCGGCGCTTTTTTCCTCCGCGGACTGCGACTTATGGTGGCCGGGCCTTTCTGCTGCAGGCTCAGGCTCTTCCATGTCGAGCATGGTCGGGCTCCCATCAGACCATGCGCTCGTCGAGG
ATGCCGAATGTCTGAGAGGTCCCTACTGATGGCATTGGTCTCTCTTTCATTCCCGGCGCACTGCACCGGGGGGCTTGATGTCTGAGGCGCCTTGCTTGCTGTTGCAGGTGGATCACGATT
TACGCAGCTGATGAGAGAAAGTTTTTTGAAGATTTCAAGAGGGCGTACATTAAACTGGTCAACACCGGCGCGTCGTGGAGAAATGTCTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA