RedOxiBase: View Perox 13237

Entry information : SpolAPx-R (Spipo21G0000700)

Entry ID	13237
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-17 (Christophe Dunand)
Sequence status	complete
Reviewer	Not yet reviewed
Last annotation changes	2015-06-17 (Christophe Dunand)

Peroxidase information: SpolAPx-R (Spipo21G0000700)

Name (synonym)

SpolAPx-R (Spipo21G0000700)

Class

Ascorbate peroxidase related [Orthogroup: APx-R001]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolAPx-R start..stop	S start..stop
NnAPx03	374	2e-130	85..319	102..334
InAPx-R01	365	8e-127	85..317	108..338
VvAPx-R	364	9e-127	79..319	90..330
AfpAPx-R	364	1e-126	40..319	54..332

Gene structure Fichier

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	66019..66217	199	N° 2	67023..67190	168	N° 3	67316..67386	71	N° 4	67604..67646	43
N° 5	67740..67836	97	N° 6	68184..68267	84	N° 7	69177..69301	125	N° 8	69431..69500	70
N° 9	69590..69692	103
join(66019..66217,67023..67190,67316..67386,67604..67646,67740..67836,68184..682 67,69177..69301,69431..69500,69590..69692)

Literature and cross-references SpolAPx-R (Spipo21G0000700)

Protein sequence: SpolAPx-R (Spipo21G0000700)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	319
PWM (Da):	34692.73
PI (pH):	8.68

Sequence 533
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MTTAATTAVPSRFPFPRSRRTALRHPGDPRPRCPLRRRRTPTECLRGEQVENPCSSSSSSEGHRGTVHDVCLLIFAVSRAVESGESLLVRTEVRKVLSKSKAPGVLRLAFHDAGTFDMNDGTGGMNGSIILELDRPENAGLRRSVVLEKAKSELDKVQNVSWADLVAVAGAEAVSLCGGPVIPIQLGRMDTSIPDPEGKLPQESLGAFDLKKCFFEKGFSTQELVTLSGAHTLGGKGFGSPIVFDNTYYKILLERPWASSGSSMSSMVGLPSDHALVEDAECLRWITIYAADERKFFEDFKRAYIKLVNTGASWRNV

Retrieve as FASTA

Remarks

Complete sequence from genomic (8 introns). Incorrect prediction from Phytozome (two first exons are missing).

Promoter►
Send to BLAST
Send to cis Analysis

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

CGGCAGTTCG CATCCAGCGG CGGAAGAAAT CGTCGGAGGC GCCTCTCCAC GATGGCTCCT CCGATGAGGA GGACATCTAC CTGGACAGCA TCTCCGGGAT GCCCGTACGC TTCACCTACG GGGATCTCCG GCAGGCAACA GACGACTTCT CGGTGAAGCT CGGGAGCGGC GGCTTTGGGT CGGTGTACCT CGGTAAGCTT CGAGATGGGT CCCGAGTGGC AGTGAAGAAG CTGGAGGGCG TACACCAGGG AACCAAGGAG TTCCGGGCGG AGGTCTCCAT CATAGGCAGC ATCCATCACA TCCATCTGGT CAGGCTCCGG GGCTTCTGTG CAGAGGGCAG CCACCGGCTT CTGGCTTACG AGTACATGTC GAACGGATCG CTGGATAGGT GGATCTTCCG CAAGGACAAG GAAGGCCATC AGCTGGACTG GGAGAAGAGG TTCAACATCG CCCTGGGCAC GGCCAAAGGT CTGGCGTACC TCCACGAGGA CTGCGAATCC AAGATCGTCC ACTGCGACAT TAAGCCGGAA AACGTCCTCC TGGACGACAA TTTTGAGGCC AAGGTCTCCG ATTTCGGGCT GGCAAAGATG ATGACCCGGG AGCAGAGTCA TGTGTTCACG ACGATGAGGG GCACGAGGGG GTACCTCGCG CCGGAGTGGA TCACGAACTA CGCGATTTCG GAGAAGAGCG ACGTATACAG CTTCGGAATG GTGCTGCTGG AGATCATTGG AGGCAGGAAG AACTTCGACC CGTCGGAGAC CTCGGAGAAG GCGCATTTCC CATCCTACGC TTTCAAGATG ATGGAGGAGG GGAAGCTGAG GGAGGTGCTG GACTCGACGC TGCTGTTGAG CGACAAGGAC GACAGCGTGG AGACGACTAT TAAGGTGGCA TTGTGGTGCA TCCAGGAGGA CATGACGATC AGACCGTCCA TGGCCAAGGT CGTGCAGATG CTCGAAGGTC TGACGGACGT TCCTCAGCCC CCGACATCCT CCCAGATGGG CTTCCGACTC TATGCGAATC TCATCAAGAC CATGAGCGAA GAGGGCTCCT CTGCCGCGTC GGGCCCCTCT GACTGGAACA GTGAAGCCTT GCTATCGGCG GTGCGGCTGT CCGGACCCAG ATAGCAAGAG GTGTTACGAG GTGGGTTCCT GGCACCTCCG ATCCTGCGGA GCCCGCCGTC TCGCGGACGA GACCGCCGGA GCCGACGGCA ACTTCTCTCC ATCGTCGGGT TGGGGTGCTT CCCCTCTTGT TGGAGAGGGC TCCGAATTCC ATTTAAATTT TCAATTCTTT ACTTTCGACG GAATCGGACC ATCATCGGGG ACCTCCGCGG GTCTCCTGCT TGTCTGCGTC ACATCTTCTT GCTCAGACGC CCATTCTTGT TCTTCCGGGG ATTGTGGGTG GGCATTATTT CGAGTCGAGC TTCGAGGGCG ACGCCGGCGG ACATCTCCAC TCCTCCCCAC TTGCTCTATC CTTTCGCAGC GCGACGGGAC CCGATTCCGT TTCCCATGCT TTCCAGCTCC AAAGTGCGTC CAGTTCCGGT GGACAAGTCC GAGACCGCCC GACGCTCTTC CTCGCCCCTC CGTGTACGGC CGCTGGCCAT CTTGACCCCA GGGGATCGAG GCCCCCCAGC ATCGTCGTGA TATGATCCGC AATCTGCTGG CCTCGAGTCT CCTCCGGTGG CCGAGGCGAC GCCAGGGTCT TTCTTTGTTT CCTTCCATCT AAGCGTGCCC GACGGGTACT ACCTCATCGT TCCCCGCTGA GAGGCCGGGA AGGTCCACAC ACACACACAC CCACGTACAG CCCTGCCTCA ATAAACGGGC TTCTCTTCTT GCTACTTGGA ATTCAAACTG GCTCGAGGCT CATACCCCGT CCCAATGGGC TGACCTCGGA CGAAGTCCAG CCCGAGGTAT TTTAGCTTAA
GCCTGGCCTC CCACCACCGC TCACGCCAAC CGACCGCAGG CTACCGCTGG TTTCTCCCGC TTCCCTTCCT CTTGCGGGGC

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGACGACCGCGGCGACCACCGCCGTCCCCAGCCGCTTCCCGTTCCCACGTTCAAGACGAACAGCGCTTCGGCATCCAGGAGACCCACGGCCACGCTGCCCACTCAGACGCCGCCGGACG
CCCACCGAGTGCCTGCGAGGGGAGCAAGTGGAGAACCCCTGCTCGTCCTCATCCTCCTCGGAAGGACACAGGGGCACAGGTGACGATATCCCCTTTTTCCTCGCTGGATCCTCTTCAACA
CCATCCCCCTTCCCACAAGGAGCTCTCTCCTTCTACTGGACGAACAGCCATAATCATTCATGCACGGGCATATATTGACCCATGCCCGTACCTTTCATCGATAAAATTTCTATTTTGCGT
TGTGGATGCCACCTCTACAGAAAATTCGCCCCCCTTGCCTTTTTTTCATCTCTCCTTAGGTTTTATTTGCCCATAATTTGACTGCAGGGGAGAGCAGGTCCTTCGCCTTCTACGGAAGAA
GATTTTTCTTTCTGGCCACGGCTCCGTTGTTGCTCTCCAGTCAAGGCTCATCAGAATACTCCAATGCCAATTCACTACAGTATGTTTCATAATTTCCTTTCCGCTTCCTATCTTCCCTCT
GAGGCAGCGGCCTCCAAATCCGCCCGATTCCTTGAACCCTGCGAGACTAGTGTAGACATGAACCCGAGTTCTGTAGTTCGATGGTCTGCTGCCTCTCGGTTCCGCCATGCTGCTTCAGTT
TGACCGCATCCTTTCAAAACATTTTATACATCAATAAAGTAATAGAGGTCGATAAGTCACAAAAAACAATCTTAGAGATCAGTAAAGTTCTGGTAGAGTTGTGGCATCTTTCAAGAGACG
AGAGCAACGTGCCAGTTTGGTAGCAGCCCAGTGGGGTTCAAGCAATGCTCTCGACAGGTGATGTCGGCGAGCTTTTGCATGTGGCCACAAGGAGTGCTGGGCTAGATCAATGGCGCATAC
CAGGAGAAATTTAATTCCTTTCTTTTAAATTTCTGCACTTTGAGTACATGATGTCTGTCTTCTCATATTTGCTGTCAGCAGAGCAGTAGAGTCTGGCGAATCTTTGCTTGTTCGAACTGA
GGTAAGGAAAGTCCTTTCAAAGTCCAAAGCTCCTGGGGTACTTCGGTTGGCCTTCCATGATGCAGGGACATTTGACATGAATGATGGCACAGGTTTATTTTGGAGCTAGAACTAGAGAAC
GTTTCATGTCTCTTACTTTTGTCTACTCTACCTTGAATGGTGTCACGCAACATCAGGCTGTCTTTTAATGGATTATATGCTTTACGTTTCCTTGCAGGTGGAATGAATGGCTCAATTATT
TTAGAACTTGATAGACCTGAAAATGCAGGTTTGCGTAGATCTGTGAAGGTGTGTCTGTTTTTCATCCTCTCTTTCGTGCATGTTTACGTGTTCAAAAAATATTTTTGTCTAGTTGGTGAA
CATATATTATTGCTTCGTATCATGACCACCCACGCTCATTTTGGTGGATTATTACATGATATTATTTATGATTCTTCTTTTGTCGGTCTCTCCCTGTCTATTTATCCTCTTATCGACTCT
CCACTTTGTTTTCTTTTCTGATTAGGTTTTGGAAAAAGCAAAGAGCGAGTTGGATAAGGTTCAGAATGGTATGACTTTCCTATTCACTGTAATTCATGTGTTCCTGCACGTGATTATTCT
CTCCTCTTCTTGAAATTTATCATGGGTTACACTGGTGTCAGTGTCCTGGGCTGATTTGGTTGCTGTGGCTGGTGCGGAAGCCGTTTCGTTATGTGGAGGTCCCGTCATTCCTATTCAGTT
AGGCAGGATGGATACAAGGTTAAATTTCACCTTACAAACATTGCACTCTTGCTAAGAAAAAAAAGAAGAAGAAGATGGATACAGGGTAATTAGTCCCGACTGTGTGATCAAATCGGTCGA
TGGCTGTTTATGTGAATAAAAATTATCGATAATGCCTCCTTGAATATCTTATGAATTTTTCTCTTCTGATACGTAATTTTGGGTTTCTTGGAGGTTTACTTTCACAAGCAGAAAAATTAA
AGCCGATGACCTGATCCCTTTCTTGGTTAAATTCTATATAATGACAGGTCTCACCCCTTTTTTAACGGATGGTCAGTCGCACCTGAACCACCAGTCTTCTAACCTTTGGATTTTCTATCA
TCCAGTATACCAGATCCCGAGGGAAAACTTCCCCAAGAGTCGCTGGGCGCTTTTGACTTAAAGAAGTGTTTCTTTGAGAAAGGCTTCTCGTGAGTAAATATTCTCATGCCATGGCATGGG
TTTTTTCTTTTCTTTTGCTTTTTCTCTTGTCTATGTTACTCTACCTGTTTTGCGTAATCAGCATAATTTAAACGGATAAATCTGTGTTTATTAATATGCTACAAGCTTTTCCATTTCACC
CGATTTTCTCTGCTGTATACTTGAAGGTTATAAGTTTTTTCCTTGTGCATGTATGATGTTCCTGGGGCCACTCAGCTCAAACTCCTCATGGGTAGGATGTAATTTGGTCCTCTGGTCATT
CTAGTCGAAAAATAACAGTCCAGCGTAGTCTGTGTATAGTAGAAATGATGCGCGTGAAGATGGTGCAAAGTCAGATTATGCTCTGTTCATATGATTTGATGTGGACCTACCAAGTCTTTT
ATTAAAGTCAGATTATGTCTCATGTTTACTGGGCACACGTTAGATGTGCGCAGAGTTCTTTTATAAAAAAAATAATAATGTCATGGGAATTCCGATAATGATGGGTTTTGCAGTGTATCA
GAGCTTTTCCACCGTCGAGAACTTGTGATATTTTTTGCAAACGTTCCATGTTGCTCTTATGTCTAGTATGTATGCCTCTGCATTCCTCTCCTCTATCGTCGACGATCAAGTTTGCTTTGC
TCAAATATGAATGACAAAACGCTTTGATTATTCCTTCGATTATTCCTGTGTTGTTTGGACCTGCAGTGTCAATAAAAGATTTTGGAAAGCCGTTGAACCTTGTCGAAATCGTCCAAATGC
TAAAGCCTAGAACGTCGTTTTTTGGCAAATTTGTCTTGTTATGTCAGCTGTTATTCAAGAGAACTTGCGGCGGCACGAGTCCGTCTCATGCCGCCGCGGGTTTTCTGTTGCGGCCATCCT
TTTGCTGCTGCAGTGTGAACTCGAGGGTCAAATTGCAGAACACAAGAACTGGTCACATTGTCTGGAGCTCATACGCTGGGAGGAAAAGGCTTTGGGAGCCCAATCGTCTTCGACAACACC
TACTACAAGATACTCTTGGAGAGACCGTGGGCGTCGTCCTCCGGTGAGTAGCCAGATGCCCGTCTGTGCAAATTGACCGCATTTATTCTCCTCTGGGGATCTCATTTGGCGGCGCTTTTT
TCCTCCGCGGACTGCGACTTATGGTGGCCGGGCCTTTCTGCTGCAGGCTCAGGCTCTTCCATGTCGAGCATGGTCGGGCTCCCATCAGACCATGCGCTCGTCGAGGATGCCGAATGTCTG
AGGTCCCTACTGATGGCATTGGTCTCTCTTTCATTCCCGGCGCACTGCACCGGGGGGCTTGATGTCTGAGGCGCCTTGCTTGCTGTTGCAGGTGGATCACGATTTACGCAGCTGATGAGA
GAAAGTTTTTTGAAGATTTCAAGAGGGCGTACATTAAACTGGTCAACACCGGCGCGTCGTGGAGAAATGTCTAG

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

Retrieve as FASTA