View Redoxidase 13241

Entry information : SpolPrx38 ( Spipo6G0030400)

Entry ID	13241
Creation	2015-06-09 (Christophe Dunand)
Last sequence changes	2015-06-09 (Christophe Dunand)
Sequence status	complete
Reviewer	Catherine Mathe
Last annotation changes	2016-02-24 (Catherine Mathe)

Peroxidase information: SpolPrx38 ( Spipo6G0030400)

Name (synonym)

SpolPrx38 ( Spipo6G0030400)

Class

Class III peroxidase [Orthogroup: Prx018]

Taxonomy

Eukaryota Viridiplantae Streptophyta Monocotyledons Araceae Spirodela

Organism

Spirodela polyrhiza (great duckweed) [TaxId: 29656 ]

Cellular localisation

N/D

Tissue type

N/D

Inducer

N/D

Repressor

N/D

Best BLASTp hits

Perox	score	E-value	SpolPrx38 start..stop	S start..stop
SpolPrx17	453	2.04e-162	72..317	1..246
VvPrx28	452	3.62e-161	1..328	12..333
LminPrx91	452	4.15e-161	1..330	1..327
VvPrx27	452	4.44e-161	1..328	11..332

Gene structure Fichierperl './assets/cgi-bin/draw_exon.pl' '13241' 'complement(join(2757632..2758411,2758532..2758744))'

Exons►

Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size	Exon	Start..End	Size
N° 1	2758532..2758744	211	N° 2	2757632..2758411	778
complement(join(2757632..2758411,2758532..2758744))

Literature and cross-references SpolPrx38 ( Spipo6G0030400)

DNA ref.	Phytozome 12: pseudo6 (2758744..2757632)
Cluster/Prediction ref.	Phytozome Gene 12: 31506040

Protein sequence: SpolPrx38 ( Spipo6G0030400)

Sequence Properties
first value : protein
second value (mature protein)

Length (aa):	330 (298)
PWM (Da):	36194.23 (31899.9)
PI (pH):	8.96 (7.73)	Peptide Signal:	cut: 0 range:Ymax-297

Sequence
Send to BLAST
Send to Peroxiscan

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

MEAMSVCLALVLSISLLVPSASASSLKVGFYKRTCPEAETIVRNIVGRAVHNNPGIGAGVIRMHFHDCFVRGCDGSVLLDSTPGKPAERQHPANNPSLRGFEVIDEAKAILESHCPNTVS
CADVLAFAARDAAYFTGGFFYELPGGRRDGRVSLESEVPGNIPPPSFNAEQLKDNFARKGLSVDEMVTLSGAHSIGVSHCSSFSSRLYGFNSTHPQDPSMDPDLAEFLKSRCPRRRGNDR
RDPTVPLDLATPHHLDIQYYRNLKKGRGLLTSDQTLWSSSRTAKLVAANTKNPHRWQEKYAAAMVHMGSIDVLTGRKGEIRRHCRVVNRH*

Retrieve as FASTA

Remarks

Promoter►
Send to BLAST
Send to cis Analysis

.........1 .........2 .........3 .........4 .........5 .........6 .........7 .........8 .........9 .........0 .........1 .........2

CAGATTTTGA TCAAAGTACA CCCCGCTGGT GACAAATATG AGGTTAAGGT TTCTGTCGGT TGGTTCGACC GCTTTGACGA GCTCGAATCT TGCCCAGGAT TCCTGTATAG AAAGAGGGCT TCCTTGTTCT TGTTGAGCGA TTACTATTAC TATTCACCGA AGGTAGCTCT GATTCCATTT ATTCTCATTA ATGCAGCCAA TAAAACGAGA TGAACGGTGT CCGTTGACAA CGGCGATGTG ATCCGCAAAG CACTGTTGCT CAGACCGTTG AGAAAGTATC TCAATGGGCA GAAAGTTGTA AAAGAGGGAG ACGACGAGAG AGTTATTGCT CATGGGAGCA GCTCCCTCTC CACATTTCAA TATTATTCTA TCACTAGATG TCTGGAGTCG TCGTCCTCTC TCGTGTCTCA TGGAATATGT CGATATGAAA AAGTCAACAA TATAGGTGTG TTGACGTACC ATCGTCTACA ATTTCCACAG AGCACATATT TTCTGATCTC AACCAGCTAA TCTTTTACGA CGAGTTAGAC GGGTCAATTC TATCTAGCTT GGAATGCACT CAAACACGAC AATTTCCTTC AGGCTCCGGA TCTGCTTAAG AATAAAAGTA TACCATATCA CAGTTTTTTC TCCCTGTAAT ATTGTATTTT ATATCTTAAT TTTCAGATTT GCATGCACAA CCGATTCGCT GTTTTATTGC ACAGACGACG AACGCCAGAA CTCAGCAGGA GCTCTCCGTC CCCCAACAAG ATCGAGAGAG AGAGAGAGAG AGGAGGGAGG AGAGAGAGAG AGnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnAGAGAGA GAGAGAGAGA GGCTCATTTT GACTACCGGC ACTTGCTTGT GATCTCCCAC CAGGGTCGTC CAAACGCGTG CTTGCGTTCG GCGCATGTCA ACGGGGAATT TACATTACTC GTACAGCTCT GTCCGTGTCA TGGAATATGT CGACGTGAAA AAGTCAACAA TATAGGTGTG TTGATGTACT ATCGTCTACA ATTTCCACAG AGCAGGTATT TTGTTTTACG ACAATTTAGA TAGGTCAGTT CTATGTAGCT TGGAACGCAC AGTTTAAACA AGACAAATTC CTTCCGGCTC CGGATCTGCT TTAGCATAAA GTACGACCGT ATCACAGTTT TTTCTCCACG GAATATTGTA TTTTATATTT TAGTTTTCAG ATTTTCAGGC AATAGTGACC TCAACCATAA TAATGAAGAA AAATTACAGA ATATAGTCTA ATGTCTTAAC ACAATTTCTT ACATTTGTAT GAAAATTTAT GAATCACTCA ACGGGAACGT GTTGCTGTTA ATCTTCTGTG TCGGGTTCTC TGCTGTCACA TTGCTGACGC AAATCTTAAA CCTCGTGGAC TGGGAACTTG AAAGCAGCTG CCAAGCGGAT TCACGTTCGA GTAGTTCACG CATATTTTCC TTCTTGTGCT TTGTCTACCC TAAATTAAGC CTGTTTGTCG ATAGATAAAC TTATTGACAC CTTTAACCTA CATCATTCGG GCGGCTGTCC CGAAACTAGT TTACGCTGAA GAATTCTCTC TCTTAGCCCC AGCCCCCACC TACCTCTCTC GCTTTCTCCA TCTGACTCGC TCTTCGTATT TTTTTTATAC AGAGAAGGTT GACTTATTCT ATATATCTTA AATTACCAAT ACCGCGCGGG GTGTGAGGAC GCGGTCAGGA TGGAAGGCTC GGTCGTTGGG ATTAATAGAC AAGGTCCGCA AGCACGAGCA CTTCTTCCAG CCATCTCTTG CTTAAAAACA CGGATAAGAA AAAGTCCACC CAATAGGGTG GAACATGTAT AAATATCCCA TCACGAGTGA AGGTGGCATC TCATCTGCAC CAGAGATATT CCATTCAGCT TCCGAGTTCC ATCTCCCACT CTCTCTCCCT GTCGTTCCTC AATCGAACCT CTTGGAAACC AGTGCGGAAG ATAGAAATAC ACATGCGCAG AGGATACCAA ATGGAGGCCA TGAGTGTTTG CCTGGCACTC GTGCTGTCCA TCTCTCTCCT AGTTCCCAGC GCATCCGCAA GTTCACTCAA AGTGGGATTC TACAAGCGGA CGTGCCCCGA AGCGGAAACA ATCGTCAGGA ACATCGTCGG CCGGGCCGTC CACAACAACC CAGGCATAGG CGCCGGGGTC ATCAGGATGC ACTTCCACGA CTGCTTCGTC AGGGTGAGCT ACATCCCCTC CCCGCCGTCT TCTCGATTCG ACTGAACAGA AAAGAGAAAT CGAAGACGGT AAACTGATCA CAAACAAGAG ATCTCATGAG GACTATTTTG GGCTTTTGAA CAGGGATGCG ATGGTTCGGT TCTCCTGGAC TCTACCCCCG GAAAACCCGC GGAGAGGCAG CATCCGGCGA ACAACCCGAG CCTGCGCGGT TTCGAGGTGA TCGACGAAGC CAAGGCTATC CTGGAATCCC ACTGCCCCAA CACGGTGTCG TGCGCCGACG TCCTGGCCTT CGCAGCCCGC GATGCTGCGT ACTTCACCGG CGGCTTCTTT TACGAACTTC CTGGCGGTAG GCGAGACGGG AGGGTGTCGT TGGAGTCTGA GGTCCCGGGC AATATTCCTC CACCCAGCTT CAACGCTGAG CAGCTCAAAG ACAACTTCGC GAGGAAAGGG CTGTCGGTGG ACGAGATGGT GACTCTCTCC GGGGCCCATT CCATCGGCGT CTCCCACTGC TCGTCCTTCT CCAGCAGGCT GTACGGGTTC AACTCCACCC ACCCACAGGA TCCCTCCATG GATCCCGACC TCGCGGAGTT CTTGAAGAGC AGGTGCCCGC GTCGGCGTGG CAACGACCGG CGCGACCCCA CTGTTCCCCT GGACCTGGCG ACGCCCCACC ATCTGGATAT CCAGTACTAC AGAAACCTCA AGAAAGGGAG GGGTTTGTTG ACCTCCGACC AGACGCTGTG GAGCAGCTCC AGGACGGCAA AGTTGGTCGC GGCCAACACG AAGAATCCGC
ACCGGTGGCA GGAGAAGTAC GCAGCCGCCA TGGTGCACAT GGGATCCATC GACGTGCTCA CCGGGCGTAA AGGCGAGATC AGGCGGCACT GTAGGGTCGT CAACCGCCAC TGA

Retrieve as FASTA

DNA ►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAGGCCATGAGTGTTTGCCTGGCACTCGTGCTGTCCATCTCTCTCCTAGTTCCCAGCGCATCCGCAAGTTCACTCAAAGTGGGATTCTACAAGCGGACGTGCCCCGAAGCGGAAACA
ATCGTCAGGAACATCGTCGGCCGGGCCGTCCACAACAACCCAGGCATAGGCGCCGGGGTCATCAGGATGCACTTCCACGACTGCTTCGTCAGGGTGAGCTACATCCCCTCCCCGCCGTCT
TCTCGATTCGACTGAACAGAAAAGAGAAATCGAAGACGGTAAACTGATCACAAACAAGAGATCTCATGAGGACTATTTTGGGCTTTTGAACAGGGGGATGCGATGGTTCGGTTCTCCTGG
ACTCTACCCCCGGAAAACCCGCGGAGAGGCAGCATCCGGCGAACAACCCGAGCCTGCGCGGTTTCGAGGTGATCGACGAAGCCAAGGCTATCCTGGAATCCCACTGCCCCAACACGGTGT
CGTGCGCCGACGTCCTGGCCTTCGCAGCCCGCGATGCTGCGTACTTCACCGGCGGCTTCTTTTACGAACTTCCTGGCGGTAGGCGAGACGGGAGGGTGTCGTTGGAGTCTGAGGTCCCGG
GCAATATTCCTCCACCCAGCTTCAACGCTGAGCAGCTCAAAGACAACTTCGCGAGGAAAGGGCTGTCGGTGGACGAGATGGTGACTCTCTCCGGGGCCCATTCCATCGGCGTCTCCCACT
GCTCGTCCTTCTCCAGCAGGCTGTACGGGTTCAACTCCACCCACCCACAGGATCCCTCCATGGATCCCGACCTCGCGGAGTTCTTGAAGAGCAGGTGCCCGCGTCGGCGTGGCAACGACC
GGCGCGACCCCACTGTTCCCCTGGACCTGGCGACGCCCCACCATCTGGATATCCAGTACTACAGAAACCTCAAGAAAGGGAGGGGTTTGTTGACCTCCGACCAGACGCTGTGGAGCAGCT
CCAGGACGGCAAAGTTGGTCGCGGCCAACACGAAGAATCCGCACCGGTGGCAGGAGAAGTACGCAGCCGCCATGGTGCACATGGGATCCATCGACGTGCTCACCGGGCGTAAAGGCGAGA
TCAGGCGGCACTGTAGGGTCGTCAACCGCCACTGA

Retrieve as FASTA

CDS►
Send to BLAST

.........1.........2.........3.........4.........5.........6.........7.........8.........9.........0.........1.........2

ATGGAGGCCATGAGTGTTTGCCTGGCACTCGTGCTGTCCATCTCTCTCCTAGTTCCCAGCGCATCCGCAAGTTCACTCAAAGTGGGATTCTACAAGCGGACGTGCCCCGAAGCGGAAACA
ATCGTCAGGAACATCGTCGGCCGGGCCGTCCACAACAACCCAGGCATAGGCGCCGGGGTCATCAGGATGCACTTCCACGACTGCTTCGTCAGGGGATGCGATGGTTCGGTTCTCCTGGAC
TCTACCCCCGGAAAACCCGCGGAGAGGCAGCATCCGGCGAACAACCCGAGCCTGCGCGGTTTCGAGGTGATCGACGAAGCCAAGGCTATCCTGGAATCCCACTGCCCCAACACGGTGTCG
TGCGCCGACGTCCTGGCCTTCGCAGCCCGCGATGCTGCGTACTTCACCGGCGGCTTCTTTTACGAACTTCCTGGCGGTAGGCGAGACGGGAGGGTGTCGTTGGAGTCTGAGGTCCCGGGC
AATATTCCTCCACCCAGCTTCAACGCTGAGCAGCTCAAAGACAACTTCGCGAGGAAAGGGCTGTCGGTGGACGAGATGGTGACTCTCTCCGGGGCCCATTCCATCGGCGTCTCCCACTGC
TCGTCCTTCTCCAGCAGGCTGTACGGGTTCAACTCCACCCACCCACAGGATCCCTCCATGGATCCCGACCTCGCGGAGTTCTTGAAGAGCAGGTGCCCGCGTCGGCGTGGCAACGACCGG
CGCGACCCCACTGTTCCCCTGGACCTGGCGACGCCCCACCATCTGGATATCCAGTACTACAGAAACCTCAAGAAAGGGAGGGGTTTGTTGACCTCCGACCAGACGCTGTGGAGCAGCTCC
AGGACGGCAAAGTTGGTCGCGGCCAACACGAAGAATCCGCACCGGTGGCAGGAGAAGTACGCAGCCGCCATGGTGCACATGGGATCCATCGACGTGCTCACCGGGCGTAAAGGCGAGATC
AGGCGGCACTGTAGGGTCGTCAACCGCCACTGA

Retrieve as FASTA